PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30076.m004483
Common NameRCOM_1341240
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 637aa    MW: 71515.2 Da    PI: 5.9181
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30076.m004483genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.83.5e-26121341120
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                    lp+G rF+Ptdeel+++yLk+k+ g+++   + ++e ++++++PwdL     + ++++ke yf s+ +  +++g rk++a + gyWk tg  + ++
  30076.m004483  12 LPVGWRFRPTDEELLCNYLKPKILGDPIGG-SDVEEDNLCDYDPWDLFGkfkSKYGDDKERYFLSPCEYYERSGLRKRKAKSGGYWKCTGDPRLIT 106
                    799************************999.559*************74232334478899********999***********************9 PP

            NAM  94 sk.kgelvglkktLvfykgrapkgektd 120
                       ++e++g+k++Lv+++ +a +  kt+
  30076.m004483 107 LGdSDEVIGTKRSLVYHNPNATDLIKTE 134
                    9867788**********88887777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-345157IPR003441NAC domain
PROSITE profilePS5100530.70512157IPR003441NAC domain
PfamPF023651.7E-1513136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MASPTQLISR NLPVGWRFRP TDEELLCNYL KPKILGDPIG GSDVEEDNLC DYDPWDLFGK  60
FKSKYGDDKE RYFLSPCEYY ERSGLRKRKA KSGGYWKCTG DPRLITLGDS DEVIGTKRSL  120
VYHNPNATDL IKTEYTYTAK LDRPILGNFV LYKLKRKSKK KQAPSKRAMK AKPHCRKTRP  180
NKKARRDESS NSTASSLAFE NKNTKDTIAN AANGAEGKER NRMVSDIENQ YPPNKKTASS  240
TYEKGESSYP KASDVENQNL SETASALTSN KGETSSLMAS STGNQNFNQI TIVSTNNKGD  300
KSCTVVFDLE NLIPNKITDT SLYDKSKPIC PRASCVEIQN SHEMINVSSH NKDETTFLMD  360
FDFEKQNPIE KITMLLHDKA NACCLVTSDF GIQNPSKKMG ISASIAGNWS PLTAMPSDFD  420
NQNQYQKTDV PVPEEDYCIV MASEVGDTTI QEVQYQYNKT DMPNLEDYSG FLKASDIEET  480
PYEEVQSHYK KANMPNLEDK EGPLIASDIE EAISLAVDPQ QLAEMIACLD SVLQQPVHTN  540
ESPNRICFGM QDHYEKIDKP ILNNGPLTGE SMVTEVSNGI LGVRAYFYRC EASEANLETY  600
VYFIVILSAD RPSTAGRDIR ILRTKRHREL AAAAYSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-131113514133Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30076.m004483
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015572313.10.0NAC domain-containing protein 45
TrEMBLB9RMX30.0B9RMX3_RICCO; Transcription factor, putative
STRINGXP_002515112.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1703136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-22NAC domain containing protein 83