PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30076.m004478
Common NameRCOM_1340990
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 302aa    MW: 33673.9 Da    PI: 7.8461
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30076.m004478genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM122.53.7e-38161373127
            NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    +G+rFhPtd elv ++L+++  g+ ++    i+ev+++++ePwdLp  +k+k++++ wyfF++rd  +  ++r nr+tk+g+Wk+tgk ++v++  
  30076.m004478  16 VGYRFHPTDAELVGHFLNRRNLGRGNDD-MPIAEVKVCDFEPWDLPdhSKIKSDDQTWYFFCNRDLLN--SRRVNRTTKAGFWKSTGKLRKVKTIg 108
                    7**********************99777.57**************96449999999*******99875..67********************9986 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyr 127
                    +++++g+k+tLvf+k   +  +kt+Wvmhey+
  30076.m004478 109 TKKVIGTKRTLVFHK---KGHVKTEWVMHEYE 137
                    7788**********3...44479********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.56214153IPR003441NAC domain
SuperFamilySSF1019417.32E-4214153IPR003441NAC domain
PfamPF023652.0E-2516137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MKTIFSSSKT VGQKTVGYRF HPTDAELVGH FLNRRNLGRG NDDMPIAEVK VCDFEPWDLP  60
DHSKIKSDDQ TWYFFCNRDL LNSRRVNRTT KAGFWKSTGK LRKVKTIGTK KVIGTKRTLV  120
FHKKGHVKTE WVMHEYEQIP KQGNFVVCKV KTKSEGKISN CRPNEMASAS ASEIAMTANL  180
SCGESELCHH LASDLEDQTP NGRTAGSTYH DGTSFCKVKP FLKSQNSDKK TDILVSEEGD  240
WSPLMATLDY GSQDPNEQTD ISTPSVAGSL EINAIEVEGP FFDGLKTLIE PEGSLNSAHS  300
HL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-231713618138Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30076.m004478
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025012451.10.0uncharacterized protein LOC8270779
TrEMBLB9RMW80.0B9RMW8_RICCO; Uncharacterized protein
STRINGXP_002515107.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-30NAC transcription factor-like 9