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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30076.m004477 | ||||||||
Common Name | RCOM_1340980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | NAC | ||||||||
Protein Properties | Length: 213aa MW: 24694.7 Da PI: 6.0297 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 130.8 | 9.9e-41 | 5 | 126 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 G+rFhP+d elv++yL++k+ g++ e+ i+e+ ++++ePw+Lp+ + +++ wyfF++ + ky+++kr r+t++gyWk tgkd++++ 30076.m004477 5 IGYRFHPSDLELVDHYLRQKMLGNDDEV-WQIPEISVLSFEPWELPQhsimLS-NpNDQVWYFFCTPNYKYSNSKRVDRTTTAGYWKVTGKDRKIK 98 69***********************999.66**************95455322.247889***********************************9 PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyr 127 + + +kktLvfy+gr pkg++t+Wvmhey+ 30076.m004477 99 D-----IAIKKTLVFYQGR-PKGVRTNWVMHEYS 126 8.....9*********765.789**********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 41.058 | 3 | 145 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.96E-44 | 4 | 144 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-24 | 6 | 126 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MDTGIGYRFH PSDLELVDHY LRQKMLGNDD EVWQIPEISV LSFEPWELPQ HSIMLSNPND 60 QVWYFFCTPN YKYSNSKRVD RTTTAGYWKV TGKDRKIKDI AIKKTLVFYQ GRPKGVRTNW 120 VMHEYSPTFN FPTERDFVIC KIKRNGYAED IPNFEEGESS TAIAAHTENQ SCNNYNSTFE 180 GEELTPPVES GSGNYATEVR IILSLIRSIC IRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-31 | 6 | 125 | 18 | 138 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30076.m004477 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015572349.1 | 1e-128 | NAC domain-containing protein 62 | ||||
Swissprot | F4JN35 | 2e-41 | NTL9_ARATH; Protein NTM1-like 9 | ||||
TrEMBL | B9RMW7 | 1e-160 | B9RMW7_RICCO; Uncharacterized protein | ||||
STRING | XP_002515106.1 | 1e-160 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2065 | 25 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.2 | 5e-37 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | 30076.m004477 |
Publications ? help Back to Top | |||
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