PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30076.m004475
Common NameRCOM_1340960
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 612aa    MW: 69127.1 Da    PI: 6.7306
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30076.m004475genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM125.25.3e-3951363127
            NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkya..tgkrknr..atksgyWkatgkdkev 92 
                    +G+rFhPtdeelv+++L++k++g+++ +++ i+ +d++k++PwdLp   +  ++++ wyfF +r+ ky+  ++ r nr  at +g Wk tg ++ v
  30076.m004475   5 VGYRFHPTDEELVSYFLRHKIDGHDFLVDDDIHVIDLCKFDPWDLPgFaSQGSNDQVWYFFYRRELKYKspSKPRYNRttATGTGHWKPTGAERLV 100
                    69***********************999999***************53344457779*********99944477999944456888********** PP

            NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                    ++k +++++g+k+tLvfy   +pk +kt+Wv+hey+
  30076.m004475 101 KAKrTKRVIGVKRTLVFYLRGTPKEVKTNWVIHEYE 136
                    99867788**********9999999**********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100545.8473155IPR003441NAC domain
SuperFamilySSF1019417.32E-454154IPR003441NAC domain
PfamPF023659.6E-235136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MNGRVGYRFH PTDEELVSYF LRHKIDGHDF LVDDDIHVID LCKFDPWDLP GFASQGSNDQ  60
VWYFFYRREL KYKSPSKPRY NRTTATGTGH WKPTGAERLV KAKRTKRVIG VKRTLVFYLR  120
GTPKEVKTNW VIHEYEPKTS PPHQADLVLC KLKEKADNKA DTSGCDEGES SHNGPSDIES  180
PQIEIPVSEV DQELLLESIL AGNGVNPNHP SAEQPRFHIE EGISIEDLMS TDVFDNGSDD  240
MTFQFHTNEP EEDPFEMADS FLDLPDEFSG EGYLCSNSAD HNVYSHESAR THHNHSGSPQ  300
SLSGVYLDDF SDMEAEIVYG KSSQFGASNL NNHAREYRQT RRIQALTETF PPSRYENSRT  360
SKHHVHHGDI LLMEASSADS ASTEEIKCVG VVGKNYPVNV KQGSSTSTDI SVKKEVVTPR  420
RSHIQRKIPA KSEQKAKEAR NQVTAINLPR ESPKESIIMK TEKDQKMGST KPNLNVKTNE  480
MPGNEKTGSF IRLETSLLSQ RPIPLSVYIV NMYYTDKMQF PDDPTIGTRV ASNFAACAQK  540
QAPIHPPRSD SVITASYKEE NLIKGSHKIR LNSSDHFYRD QSFTANTNGV GCTTWRKCHL  600
ISQKSLIYNL MH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-29615520165NO APICAL MERISTEM PROTEIN
1ut4_B8e-29615520165NO APICAL MERISTEM PROTEIN
1ut7_A8e-29615520165NO APICAL MERISTEM PROTEIN
1ut7_B8e-29615520165NO APICAL MERISTEM PROTEIN
4dul_A8e-29615520165NAC domain-containing protein 19
4dul_B8e-29615520165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30076.m004475
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015572333.10.0NAC domain-containing protein 101
RefseqXP_025012427.10.0NAC domain-containing protein 101
TrEMBLB9RMW50.0B9RMW5_RICCO; Transcription factor, putative
STRINGXP_002515104.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14584713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.22e-40TCV-interacting protein