PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30072.m000986

Common Name

RCOM_1322720

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

MYB_related

Protein Properties

Length: 269aa MW: 30591.7 Da PI: 5.8889

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30072.m000986	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.7	1.8e-15	10	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l 30072.m000986 10 RGRIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 55 678889**************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-23	1	60	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.07E-13	4	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.578	5	59	IPR017930	Myb domain
SMART	SM00717	3.4E-14	9	57	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-14	11	55	IPR001005	SANT/Myb domain
CDD	cd00167	5.25E-12	15	55	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MNYLRPSVKR GRIAPDEEDL ILRLHRLLGN RWSLIAGRIP GRTDNEIKNY WNTHLSKKLI 60 SQGIDPRTHK PLNPNPSSSQ INQDRNQNIS GSKFEETSQT YRVIATKVSE NFNMVANLNH 120 DNQYQNNPVV DHDGIIDNWP ACDGLVMGFQ GGGQGQSNAE YYIGNQNQNH EDPFSSFLDS 180 LINENENLFL NHQHQHNHYH HLQQQQQQQQ QILQQQLQQG EQQNPNMIAP PAQPIVSSPQ 240 AFMNSTTIWE TEVLSSMAAA LGDDDVALN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30072.m000986

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002525729.2	0.0	transcription repressor MYB5
TrEMBL	B9SIB0	0.0	B9SIB0_RICCO; R2r3-myb transcription factor, putative
STRING	XP_002525729.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3894	30	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	1e-42	myb domain protein 5

Link Out ? help Back to Top
Phytozome	30072.m000986