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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
30068.m002670 |
| Common Name | LOC8278531, RCOM_1316970 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 230aa MW: 25088.8 Da PI: 10.5814 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 30068.m002670 | genome | JCVI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 252.4 | 2.9e-77 | 37 | 230 | 105 | 301 |
GAGA_bind 105 tksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksekskkkvkkesad.erskaekksidlvl 198
t+si+s +q++++ +++ + a+ e a+++++ +k k+r+++ ++k +++ +k+ k ++++k++kk++++ +++k+ek++i++ +
30068.m002670 37 TNSIHSQG----SQIDEPILPVPPIC-SIAPAAEPAKNNNSGAKPAKARKQKPSAKGSNQIpSKTFKLKQPRKTSKKKGQSmPEAKREKRNINVDI 127
44444322....46666666644433.333333333333333343443333333333333323333445556666666666689************ PP
GAGA_bind 199 ngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGt 294
+++D s++P P CsCtG++r+CYkWG+GGWqS+CCtt+iS yPLP+s+ r+gaR+agrKmS+ga+ klL kLaaeGydls+pvDLk+hWA+HGt
30068.m002670 128 GRMNFDLSGVPSPFCSCTGMPRVCYKWGAGGWQSSCCTTNISEYPLPMSAARPGARMAGRKMSNGAYLKLLLKLAAEGYDLSHPVDLKEHWARHGT 223
************************************************************************************************ PP
GAGA_bind 295 nkfvtir 301
nkfvti+
30068.m002670 224 NKFVTIK 230
******8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 230 aa
Download sequence Send
to blast |
MGTYSNRNHL IPEASTGASL PHFAWFYPGS FYSAPKTNSI HSQGSQIDEP ILPVPPICSI 60
APAAEPAKNN NSGAKPAKAR KQKPSAKGSN QIPSKTFKLK QPRKTSKKKG QSMPEAKREK 120
RNINVDIGRM NFDLSGVPSP FCSCTGMPRV CYKWGAGGWQ SSCCTTNISE YPLPMSAARP 180
GARMAGRKMS NGAYLKLLLK LAAEGYDLSH PVDLKEHWAR HGTNKFVTIK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
