PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30068.m002619
Common NameRCOM_1314760
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 615aa    MW: 68363.2 Da    PI: 5.1006
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30068.m002619genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.26.4e-5391401127
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+evd++k+ePwdLp  + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd+++ +
  30068.m002619   9 LPLGFRFRPTDEELINHYLRLKINGRDSEV-DVISEVDVCKWEPWDLPglSVIKTDDPEWFFFCPRDRKYPNGQRSNRATDAGYWKATGKDRTIRA 103
                    699************************999.9****************6447888899*************************************9 PP

            NAM  95 kkgel....vglkktLvfykgrapkgektdWvmheyr 127
                    +k+      +g+kktLvfy+grapkge+t+W+mheyr
  30068.m002619 104 RKSGSnpicIGMKKTLVFYRGRAPKGERTNWIMHEYR 140
                    844445677***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-573146IPR003441NAC domain
PROSITE profilePS5100552.3119176IPR003441NAC domain
PfamPF023651.8E-2710140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MAVLHMESLP LGFRFRPTDE ELINHYLRLK INGRDSEVDV ISEVDVCKWE PWDLPGLSVI  60
KTDDPEWFFF CPRDRKYPNG QRSNRATDAG YWKATGKDRT IRARKSGSNP ICIGMKKTLV  120
FYRGRAPKGE RTNWIMHEYR PTLKDLDGSA PGQQTGYSPT TSKSSPDDTS SDIVQETETS  180
VMQVGKQSEG ITSWTVDDSD NMISSASLHV DSCCNSHSEV EDHAAEATAL GVSTRLYCYW  240
NSIGHCIRVY PPLEEDSNLF EPMTGEIDCK VFSPMPYDTH AGLAHYMDSP YACDFGNDDN  300
GFNFMDGTSE PDVSLTELLG EVFNNNDDYS GERLTTLKNS IVGSETQLPA RIPWQNFHIK  360
DNGAYNETNK GMAQVQMQAS YGYWRTQTSS FDEELGRSNI CDLGHESVKQ DAPSALSAVG  420
PSFNLFNDME ESIKELSPGN QRSAVGGTGI KIRTRQPQVR SHADNFASQG TAPRRLRLQM  480
KIATVPAGKG VERDASHRSL GDEDEVQSGA TEAANAEDHN PAFDELQKER QLDNSKESEK  540
ITKESSLNLR LRVKQNGKSG SSEIESSALP DLAPVKRGRS SSSVYIVGIL LVLVLFLVLV  600
GMWIKITCIM KSVRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-43814014139Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30068.m002619
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015574515.10.0LOW QUALITY PROTEIN: protein NTM1-like 9
TrEMBLB9RYY30.0B9RYY3_RICCO; Transcription factor, putative
STRINGXP_002518952.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136251825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.21e-112NAC transcription factor-like 9