PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30068.m002546
Common NameLOC8288813, RCOM_1312830
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Dof
Protein Properties Length: 306aa    MW: 32972.4 Da    PI: 8.4617
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30068.m002546genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.29.7e-4043104263
         zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                    ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+sss
  30068.m002546  43 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS 104
                    7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-3036101IPR003851Zinc finger, Dof-type
PfamPF027011.6E-3345101IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.13447101IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104985IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDTAQWPQEI LVKPIEELVT NTCPKPASAA AAAALERKSR PQKEQALNCP RCNSTNTKFC  60
YYNNYSLTQP RYFCKTCRRY WTEGGSLRNI PVGGGSRKNK RSSSSSSSSL STCSSNSSSS  120
SSKKLPDLVT PQISLSQSST QNPNNNSNKI PEGHDLNLAF PSTQGIRSFS ELIQVPSINE  180
GNNNKNPSST SNTTTSSQLS ALELLTGISS RGLNSFMPMP VQDPNSVYTS GFPLQDFKPT  240
LNFSLDGLGS GYGSLQGVQE TGGRLLFPFE DLKQVSSTST DIEQNREQGD SAGYWTGMLG  300
GGGGSW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30068.m002546
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431012e-65AC243101.1 Gossypium arboreum clone GM203N05-jhe, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002518880.10.0dof zinc finger protein DOF4.6
SwissprotQ8LAP86e-73DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLB9RYR10.0B9RYR1_RICCO; Zinc finger protein, putative
STRINGXP_002518880.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.11e-58Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]