PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30066.m000752 | ||||||||
Common Name | RCOM_1311480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 26987.7 Da PI: 9.257 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.8 | 8.2e-13 | 87 | 131 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 n+ ErrRRdri++++ Lrel+P++ K + a++L A++Y+k L 30066.m000752 87 RNIYERRRRDRIRDKMKSLRELIPHC-----HKQDRASMLDDAINYLKAL 131 6999*********************9.....6****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.11E-4 | 67 | 132 | No hit | No description |
PROSITE profile | PS50888 | 15.688 | 82 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-10 | 87 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-15 | 87 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-15 | 87 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.1E-14 | 88 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
METDSSLDIF GSLSEIQSLP YLHQASPTNT NHDQFLPILC GEKSSASSKR KSIETHDDHY 60 DDIGGISGEP RRNKNHRNRK RISADMRNIY ERRRRDRIRD KMKSLRELIP HCHKQDRASM 120 LDDAINYLKA LKLHVEMLAN MGGRGALCQA PSSPAATPYF CPVIQTNSTS EMRMFSTSLD 180 CQAPPPSFGL HLQLQPSSLP APPPLQQISP LLLFPRLPLL GAATSTPLLI ASSSHGHSAT 240 SQK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 94 | RKRISADMRNIYERRRR |
2 | 90 | 95 | ERRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30066.m000752 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015579556.1 | 1e-129 | uncharacterized protein LOC8271500 | ||||
TrEMBL | B9SM10 | 1e-178 | B9SM10_RICCO; Uncharacterized protein | ||||
STRING | XP_002527029.1 | 1e-178 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67110.1 | 2e-13 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 30066.m000752 |