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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30066.m000750 | ||||||||
Common Name | RCOM_1311460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bHLH | ||||||||
Protein Properties | Length: 260aa MW: 28845 Da PI: 10.0678 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.8 | 2.9e-11 | 99 | 146 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+ ErrRR+ri++++ L el+P++ K + a+ Le A++Y+k L 30066.m000750 99 RTRSATYERRRRNRIREKLKALGELIPHC-----HKQDTASLLEAAIDYLKAL 146 6666778*********************9.....6****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-15 | 95 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-16 | 96 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.307 | 97 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.0E-9 | 99 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.2E-12 | 103 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MVPHCSPADP NLFNNNIRLE TDSDNDNIFR SLSDIQSIPF LQQQGSPTTC QFTPLLLCHE 60 ESSASSKTKS TETRLIFQDI SRGIPGALKT NKLGQNHRRT RSATYERRRR NRIREKLKAL 120 GELIPHCHKQ DTASLLEAAI DYLKALKLQV EMMSNMGGGA LCQASSMSAA HYFCPVMPMD 180 PTSATRMFST SQYVGALMVP PPSVHPHFQL HPSSLPATAQ FRQPFIFSLP LLGAAISTPL 240 STASSYQGQS TTSRKQKRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30066.m000750 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015579556.1 | 3e-36 | uncharacterized protein LOC8271500 | ||||
TrEMBL | B9SM08 | 0.0 | B9SM08_RICCO; Uncharacterized protein | ||||
STRING | XP_002527027.1 | 0.0 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59060.4 | 3e-11 | phytochrome interacting factor 3-like 6 |
Link Out ? help Back to Top | |
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Phytozome | 30066.m000750 |