PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30061.m000291
Common NameLOC8278991, RCOM_1293220
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 361aa    MW: 40276.6 Da    PI: 7.8794
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30061.m000291genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-06326226
                   -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                   k++lC+ffa  G C  G+ C F+H+
  30061.m000291  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                   99****6666.*************5 PP
2zf-CCCH26.21.4e-083454526
                   --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                   +C ++++ G+C+yG+rC++ H+
  30061.m000291 34 ICTYYQK-GICSYGSRCRYEHV 54
                   7******.***********997 PP
3zf-CCCH216e-07142164326
                    S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                    ++lC+ fa+ G C++Gd+C+  Hg
  30061.m000291 142 HPLCS-FAAAGNCPRGDKCPHVHG 164
                    799**.*************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.671128IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-7326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2912956IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-43453IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-63454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.554139166IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025140165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4144164IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.24E-13196272No hitNo description
Gene3DG3DSA:3.30.40.106.2E-10201267IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00132207267No hitNo description
SMARTSM001843.2E-7208265IPR001841Zinc finger, RING-type
PfamPF000974.3E-7208265IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.238208266IPR001841Zinc finger, RING-type
PROSITE patternPS005180232241IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.56295323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.216295324IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQK GICSYGSRCR YEHVKPLRSD  60
SASSSSTVSY QSLASTSIPL VHSVRTGSSR LTSVHNASGE LSASRNPFFP PSNPAWNLDS  120
GPNNLLENGE IIEPRNVKPE DHPLCSFAAA GNCPRGDKCP HVHGDLCPTC GKNCLHPFRP  180
EEREEHLRTC EKKQKHLEAL KHSQEIECSV CLDRVLSKPT AAERKFGLLS ECDHPFCISC  240
IRNWRSSSPT SGMDVNTALR ACPICRKLSY FVVPSVIWYS SKEEKQEIVD SYKAKLSSID  300
CKHFDFGNGN CPFGTSCFYK HAFRDGRLEE VALRHLGAED GQTVIAKDIR LSDFLGSLQI  360
S
Cis-element ? help Back to Top
SourceLink
PlantRegMap30061.m000291
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002526765.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X3
SwissprotE0X9N41e-178C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLB9SL960.0B9SL96_RICCO; Makorin-1, putative
STRINGXP_002526765.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-165C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]