![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 30057.m000083 | ||||||||
Common Name | LOC8266414, RCOM_1287290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 238aa MW: 26219.6 Da PI: 4.4799 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.3 | 5.5e-07 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ +++ C ++ lC++C e H H++ 30057.m000083 4 QCDVCERAPATVICCADEAALCAKCDIEVHAAnklaskHQR 44 7*****************************65667777765 PP | |||||||
2 | zf-B_box | 29.1 | 2.1e-09 | 53 | 94 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + + C+ ++ek + +fC +++ l+C+dC + +H+ H 30057.m000083 53 KLPPCDICQEKAAFIFCVEDRALFCQDCDEPIHSAgslsanH 94 6789*****************************656666666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.3 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.10E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 1.5E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.8E-5 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.5E-14 | 52 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.887 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.3E-8 | 53 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.70E-8 | 55 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence Send to blast |
MKIQCDVCER APATVICCAD EAALCAKCDI EVHAANKLAS KHQRLLLNCL SNKLPPCDIC 60 QEKAAFIFCV EDRALFCQDC DEPIHSAGSL SANHQRFLAT GIRVAVGSSC TKDTKKSCLE 120 PPNQSEQQTS TKLSVQQPSS FNSQWAVDEL LQLSDFESSP DKKEQVEFGE FQWLADMGIF 180 GEQLPQEALA AAEVPQLTVP PSVNVTSYRP TKSNMSNKKP RIEISDEDDE YFTVPDLG |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 30057.m000083 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002534139.1 | 1e-176 | B-box zinc finger protein 25 | ||||
Swissprot | Q9SID1 | 1e-99 | BBX25_ARATH; B-box zinc finger protein 25 | ||||
TrEMBL | B9T7C0 | 1e-175 | B9T7C0_RICCO; Salt-tolerance protein, putative | ||||
STRING | XP_002534139.1 | 1e-176 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3438 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G31380.1 | 7e-93 | salt tolerance homologue |
Link Out ? help Back to Top | |
---|---|
Phytozome | 30057.m000083 |
Entrez Gene | 8266414 |
Publications ? help Back to Top | |||
---|---|---|---|
|