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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
30055.m001612 |
Common Name | RCOM_1282430 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family |
NAC |
Protein Properties |
Length: 387aa MW: 43431.1 Da PI: 6.8605 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
30055.m001612 | genome | JCVI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 156.7 | 1e-48 | 17 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
+ pGfrF+Ptd el+++yLkkk+eg + + evi+ev+i+++ePwdLp + +v ++e+ew+fFs r +ky++g++++rat+ gyWkatgk+++v+s
30055.m001612 17 MFPGFRFSPTDVELISYYLKKKMEGAEKCV-EVISEVEICSHEPWDLPaAkAVIQSENEWFFFSARGRKYPNGTQSRRATELGYWKATGKERNVKS 111
579************************777.99**************95335556788************************************** PP
NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
++ ++g+k+tLvf+ grapkge+t+W+mhey +
30055.m001612 112 -GSDVIGTKRTLVFHIGRAPKGERTEWIMHEYCM 144
.999****************************86 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009845 | Biological Process | seed germination |
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
GO:0033619 | Biological Process | membrane protein proteolysis |
GO:0048573 | Biological Process | photoperiodism, flowering |
GO:0071472 | Biological Process | cellular response to salt stress |
GO:0005634 | Cellular Component | nucleus |
GO:0005886 | Cellular Component | plasma membrane |
GO:0016021 | Cellular Component | integral component of membrane |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 387 aa
Download sequence Send
to blast |
MAGVSRETQM SIEASSMFPG FRFSPTDVEL ISYYLKKKME GAEKCVEVIS EVEICSHEPW 60 DLPAAKAVIQ SENEWFFFSA RGRKYPNGTQ SRRATELGYW KATGKERNVK SGSDVIGTKR 120 TLVFHIGRAP KGERTEWIMH EYCMHGKPQD SLVVCRLRRN VEFRPNDNSN RNSLNRRQLS 180 ASDGGIERTG MSEGDKRAEC SRKCSSSYDS HSIEQIDSAS ESDQKLSNEA PLAESSCQQQ 240 DSDKEEDFYA DILKDDIVKL DETPFSEAQE LLPFIAGKAE TQAQAQMQQP MGIIVSQAIP 300 PNSIASQGIA NRRIKLKRQA PPAADAEPSG SGKEEESPKC VVSMAKHRPI FIVFIILTLL 360 ALLASWLWGS LHTKRMTYGI LYKAFWD
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 9e-38 | 16 | 159 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-38 | 16 | 159 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-38 | 16 | 159 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-38 | 16 | 159 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-38 | 16 | 159 | 19 | 167 | NAC domain-containing protein 19 |
3swm_B | 9e-38 | 16 | 159 | 19 | 167 | NAC domain-containing protein 19 |
3swm_C | 9e-38 | 16 | 159 | 19 | 167 | NAC domain-containing protein 19 |
3swm_D | 9e-38 | 16 | 159 | 19 | 167 | NAC domain-containing protein 19 |
3swp_A | 9e-38 | 16 | 159 | 19 | 167 | NAC domain-containing protein 19 |
3swp_B | 9e-38 | 16 | 159 | 19 | 167 | NAC domain-containing protein 19 |
3swp_C | 9e-38 | 16 | 159 | 19 | 167 | NAC domain-containing protein 19 |
3swp_D | 9e-38 | 16 | 159 | 19 | 167 | NAC domain-containing protein 19 |
3ulx_A | 8e-38 | 3 | 157 | 2 | 165 | Stress-induced transcription factor NAC1 |
4dul_A | 9e-38 | 16 | 159 | 16 | 164 | NAC domain-containing protein 19 |
4dul_B | 9e-38 | 16 | 159 | 16 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 310 | 317 | NRRIKLKR |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |