PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30045.m000471
Common NameRCOM_1270600
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 301aa    MW: 33182.1 Da    PI: 7.3448
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30045.m000471genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-0597117323
                    ETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                    C++C ksFs++  L  H++ H
  30045.m000471  97 CKYCEKSFSNSQALGGHQNAH 117
                    ******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.35E-791122No hitNo description
Gene3DG3DSA:3.30.160.601.0E-592121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.0595122IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSEEGSFRDA HADKKTKGKG VQDEEPIKDL NEEADPILDL SLSSSKLVGF ESRKELNLLG  60
LFDNDFPKVL ESGNNTANNK AAAAAAAPEA EEKRFLCKYC EKSFSNSQAL GGHQNAHKRE  120
RALLKREKGL ELVIPYGLYI DADPLYSLFP AVTGFPTTQG TFNRPIGINM HSMIQKPSHQ  180
QQQQRQHYSF HHQGPGHAFE GWPRPAPSMK PQVRMYVNDN NSWANYNSNS GAFPPLDTMA  240
STMMNRRPPL GRSTESSSLA NLNVVAANRI SGQHFDLSGI GRSSGNPECD LLAGRDLSLN  300
L
Cis-element ? help Back to Top
SourceLink
PlantRegMap30045.m000471
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021684293.14e-63zinc finger protein 1-like
TrEMBLB9SCE60.0B9SCE6_RICCO; Uncharacterized protein
STRINGXP_002523665.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2855323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.17e-15zinc-finger protein 1