PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30032.m000479 | ||||||||
Common Name | LOC8269734, RCOM_1259530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | NAC | ||||||||
Protein Properties | Length: 261aa MW: 29934.3 Da PI: 6.5166 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 130.7 | 1.1e-40 | 4 | 138 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee....vikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 l+pG+rF Pt+eelv++yL++k+eg++++l++ vi+ +diy++ Pw+Lp+ +++ ++w+ F++r++++ +g r++r t+ gyWkatg+ 30032.m000479 4 LAPGVRFYPTEEELVSFYLHHKLEGNRNDLNQvldlVIPVLDIYEFSPWELPQysgiYNRTDPEQWFLFIPRQESEVRGGRSKRLTTVGYWKATGS 99 579************************55544444469999***********646543334566********************9999******** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v+s++++ + +k+t+vfykgrapkg+ktdW m+ey+ 30032.m000479 100 PGYVYSSDNRCIAVKRTMVFYKGRAPKGHKTDWKMNEYK 138 **************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-43 | 3 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.091 | 4 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.6E-20 | 6 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MEDLAPGVRF YPTEEELVSF YLHHKLEGNR NDLNQVLDLV IPVLDIYEFS PWELPQYSGI 60 YNRTDPEQWF LFIPRQESEV RGGRSKRLTT VGYWKATGSP GYVYSSDNRC IAVKRTMVFY 120 KGRAPKGHKT DWKMNEYKAI QRETSSSTAA NANPKLREEF SLCRVYKKSK CLRSFDRRPV 180 GVEVGPRIRA QQAHGHGATE AHQNPAVMET RSSHDDNISS SGDHGYPQKT GEESNTALAI 240 GNESFLDWDQ LENWYFDGDD I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-30 | 4 | 168 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-30 | 4 | 168 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-30 | 4 | 168 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-30 | 4 | 168 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-30 | 4 | 168 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-30 | 4 | 168 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-30 | 4 | 168 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-30 | 4 | 168 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-30 | 4 | 168 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-30 | 4 | 168 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-30 | 4 | 168 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-30 | 4 | 168 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-30 | 4 | 168 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-30 | 4 | 168 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30032.m000479 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002530539.1 | 0.0 | NAC domain-containing protein 90 | ||||
TrEMBL | B9SX20 | 0.0 | B9SX20_RICCO; NAC domain-containing protein, putative | ||||
STRING | XP_002530539.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 5e-71 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | 30032.m000479 |
Entrez Gene | 8269734 |