PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30005.m001298
Common NameRCOM_1213960
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 302aa    MW: 34787.1 Da    PI: 7.0549
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30005.m001298genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.3e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv++++q+G g+W++ ++  g+ R++k+c++rw +yl
    30005.m001298 14 KGPWTPEEDQILVNYIQQYGHGNWRALPKQAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-27564IPR009057Homeodomain-like
PROSITE profilePS5129424.417965IPR017930Myb domain
SMARTSM007172.1E-151363IPR001005SANT/Myb domain
PfamPF002495.2E-171461IPR001005SANT/Myb domain
SuperFamilySSF466897.65E-251588IPR009057Homeodomain-like
CDDcd001673.35E-121661No hitNo description
PROSITE profilePS500905.06462107IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.4E-96588IPR009057Homeodomain-like
SMARTSM007172166292IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MVRAPCCEKM GLKKGPWTPE EDQILVNYIQ QYGHGNWRAL PKQAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF TREEEETIIQ LHEMLGNSLK QYPLYNRLKS RMTRSHRLIS ENAMHKRAYP  120
NEPKLVNIHN YQTRWALWLM HRLKQNQAAT ATPEIKRRSV DMSRVNNIDQ ELKAKPEFIN  180
SSNPAASEAT EYRPISPHPS SSDISSVTTG DDHPNNMSMK VEPSGDFPEM DDNFWSEVLS  240
SENSSSDSDF SSELQLQIPS SSLGNIHVGP VYYGCHTNMY DSMDFWYNLF TRAGESLELP  300
DI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-1612872599MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30005.m001298
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015578091.11e-171transcription factor MYB4
TrEMBLB9SF450.0B9SF45_RICCO; Transcription repressor MYB4, putative
STRINGXP_002524614.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.15e-52myb domain protein 14