![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 30005.m001282 | ||||||||
Common Name | LOC8288334, RCOM_1213200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 414aa MW: 44702.9 Da PI: 4.8778 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.2 | 5.3e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ 30005.m001282 4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44 7*****************************65677777766 PP | |||||||
2 | zf-B_box | 19.9 | 1.5e-06 | 46 | 89 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C++++++++ + C d + lC++C H + H++++ 30005.m001282 46 LLCERCNSQPALIRCADERLSLCQKCDWMVHGNsnssstHKRQT 89 57*************************99995578888888776 PP | |||||||
3 | CCT | 60.9 | 4.1e-21 | 357 | 400 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a++RYkeK+k RkFeKk+rY+sRKa+A+ R RvKGrFvk+ 30005.m001282 357 RNDAVMRYKEKKKIRKFEKKVRYASRKARADVRRRVKGRFVKAG 400 999**************************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.684 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.26E-7 | 4 | 47 | No hit | No description |
SMART | SM00336 | 3.1E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.873 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.33E-4 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.52 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 9.9E-16 | 357 | 399 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.2 | 357 | 399 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 414 aa Download sequence Send to blast |
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPALIRC 60 ADERLSLCQK CDWMVHGNSN SSSTHKRQTI NCYTGCPSAS ELSSLWSFVL DFPSVDGEST 120 CEQELGLMSI AEDSSTNTWG PPDKTISQNV SGAAAVNNAC EIPKSSGCVG NSSAPQLMPN 180 NLDHPAGSAN APLPKLCCPG TKGPALCEDD LYEDFNMDEV DLNLENYEEL FGIALNDSEE 240 LFENGGIDSL FGMKDMSAAD SNCQGAVAAE GSSAGLVNAV QPACSNAASA DSMMSAKTEP 300 ILCFTARPGH SNLSFSGLTG ESSAGDYQDC GASSMFLMGE PPWCPPCPES SFSSANRNDA 360 VMRYKEKKKI RKFEKKVRYA SRKARADVRR RVKGRFVKAG DAYDYDPLNQ TRSC |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 30005.m001282 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025014105.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 isoform X1 | ||||
Swissprot | Q9SSE5 | 1e-157 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | B9SF29 | 0.0 | B9SF29_RICCO; Transcription factor, putative | ||||
STRING | XP_002524598.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4362 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-123 | CONSTANS-like 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 30005.m001282 |
Entrez Gene | 8288334 |