PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29991.m000642

Common Name

LOC8267006, RCOM_1186440

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

C2H2

Protein Properties

Length: 310aa MW: 33515.1 Da PI: 4.2495

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29991.m000642	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00043	284	307	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C +sF + L++H + H 29991.m000642 284 FSCNSCERSFGSDAALQSHSKAkH 307 89*****************88767 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03066	1.9E-7	3	183	No hit	No description
PROSITE profile	PS50157	11.635	284	310	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	286	307	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MEFWGVEIKA GETLKVEPNP ESLIHLSQAA LGESKKEKGN ESVPLYVKVD NKKIILGTLS 60 QENFPQIAFD IVFEKEVELS HNWKNGSVYL SGYQTPLPEE DDMFSEEESD DEEPLPLVNA 120 DNGGIQLAGT QKAAAKSNIA KPESSTKQKA KPVQPSKAEE ASDDDDESDD DDDDEDDDED 180 ESDDEDESEE GMSVDEDSDD EGDSESEDEE TPKKADKGKK RQNDSAVKTP VSSKKAKLIT 240 PQKTADGKKG GHTATPHPAK GAKASANGNT PKPQTQTPKS GGKFSCNSCE RSFGSDAALQ 300 SHSKAKHSSK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29991.m000642

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002527449.1	0.0	histone deacetylase HDT1 isoform X1
TrEMBL	B9SN80	0.0	B9SN80_RICCO; Histone deacetylase 2a, putative
STRING	XP_002527449.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1025	30	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	6e-36	histone deacetylase 3

Link Out ? help Back to Top
Phytozome	29991.m000642
Entrez Gene	8267006