PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29989.m000421
Common NameRCOM_1182710
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family STAT
Protein Properties Length: 698aa    MW: 78973.9 Da    PI: 5.8601
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29989.m000421genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT206.71.8e-642233441122
           STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkyp 96 
                    ldvvl+na++q+++kd+evvasLlyad+gl+vek++++eapLLisydG+ef+s++rp+kl++GrasfklkisqLsskcdnrLfrikfe+p+++ ++
  29989.m000421 223 LDVVLSNAISQAIDKDIEVVASLLYADNGLPVEKTSEDEAPLLISYDGIEFASVNRPSKLVHGRASFKLKISQLSSKCDNRLFRIKFEMPEFRGHQ 318
                    8*********************************************************************************************** PP

           STAT  97 fleavskpirCisrsrntrsssltkk 122
                    fl+a+s+pirCisrsrn rssslt+k
  29989.m000421 319 FLDAFSHPIRCISRSRNPRSSSLTWK 344
                    **********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.505.102.8E-6621687IPR000980SH2 domain
SuperFamilySSF555507.04E-8623692IPR000980SH2 domain
PROSITE profilePS500019.737629698IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MGDDNVINTK DYILLKDFRM EIELQGGTLS FCFWVYLIHS NTAFPASIIN QVYSDITSNS  60
PFLALNEKKI MMLLPLSLLQ KEAPDPCNYA SLTEAQHVVM GNEIPMEIWI HVGCEVLTDV  120
LRLHINGEIV RELPLSSSLN KDSLSDGSRK ITLVGAAGDH GLQGYVYNAE VLPLHFSISD  180
HYIKDIPLQL SIDHSSTSEI EEGNDGIWNI VGGKASCRRI FSLDVVLSNA ISQAIDKDIE  240
VVASLLYADN GLPVEKTSED EAPLLISYDG IEFASVNRPS KLVHGRASFK LKISQLSSKC  300
DNRLFRIKFE MPEFRGHQFL DAFSHPIRCI SRSRNPRSSS LTWKRSTSGG CSLNEFQSFG  360
LDNESVEFPH NSVHEIKPTP ASKRIKLEQQ ITSVLEKPEE ECNSHASHGN QVRYQVLLPL  420
SFIFFSFIQK LCIKSVGTKL DGRPENLEEA EKLPSDSEST EERGSDLKVM SSIGYSISDV  480
TIFKYCLGGL TDKALLLKEV ATSASEEDLF RFAHEVSLYS GCSHHRRQIM IGKRLIEEGT  540
KVWNSIAQSH QAVHWENVIF EIDEQFMKIA CCNRSLIEQD FELLRRIAGC REYVAQENFE  600
KMWCWLYPIA FTLSRKCINT MWSSTSPRWI EGFITKEEAE LSLQGPRGLQ EPGTFILRFP  660
TSRSWPHPDA GSLIVTYVGN DYTVHHRLLC LDYIYRVY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379387PASKRIKLE
Cis-element ? help Back to Top
SourceLink
PlantRegMap29989.m000421
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015580427.10.0SH2 domain-containing protein A isoform X2
TrEMBLB9SR640.0B9SR64_RICCO; Uncharacterized protein
STRINGXP_002528483.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67103036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B