 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
29986.m001672 |
| Common Name | LOC8265474, RCOM_1180150 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
| Family |
ARR-B |
| Protein Properties |
Length: 473aa MW: 54201.6 Da PI: 6.3291 |
| Description |
ARR-B family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 29986.m001672 | genome | JCVI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 72.7 | 5.4e-23 | 215 | 271 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55
k+r+ Wt+eLHe+Fv+a ++L G+e+A+P +ile+ m+v+++t+eh++SHLQkYR+
29986.m001672 215 KKRMIWTEELHEKFVRAFNHL-GHENAVPLKILEClqrMNVHSITREHIASHLQKYRM 271
78*******************.*********97643339******************8 PP
|
| 2 | Response_reg | 71.1 | 4.6e-24 | 37 | 144 | 1 | 108 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94
vl+vdD+++ + +l+++l++ y +v+ ++++++al +l+e + +D++++D+ mp+mdG+ell+ i+e e+ lp++++++ ++ e +++ + Ga
29986.m001672 37 VLVVDDDRTCLLILEKMLRNCLY-KVTKCRKAKDALSMLREDKnkFDIVVIDLHMPDMDGFELLE-IAEFEMGLPVVMMSSDDDHEVIKKGVLHGA 130
89*********************.***************877778******************95.889999************************ PP
SEEEESS--HHHHH CS
Response_reg 95 kdflsKpfdpeelv 108
d+l Kp+ +e+l
29986.m001672 131 CDYLIKPVRMEALK 144
********999885 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0000160 | Biological Process | phosphorelay signal transduction system |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0016310 | Biological Process | phosphorylation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0016301 | Molecular Function | kinase activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 473 aa
Download sequence Send
to blast |
METNNDNNKG KAIIQGSSSL EKTSDCVSNE FPAGLRVLVV DDDRTCLLIL EKMLRNCLYK 60
VTKCRKAKDA LSMLREDKNK FDIVVIDLHM PDMDGFELLE IAEFEMGLPV VMMSSDDDHE 120
VIKKGVLHGA CDYLIKPVRM EALKMIWQHV IRKKKNTAKD ELEQLIGLED DILLLTKPDS 180
DDDMIHGNLN NTRNSKRRRN NEYDDEPSDP AATGKKRMIW TEELHEKFVR AFNHLGHENA 240
VPLKILECLQ RMNVHSITRE HIASHLQKYR MYLRKQDDIP QLKQEHLLPS RMNKTSILEQ 300
PHPSDNLQFC TNTFPFPLPC HTTPQARLRA PLSTITNSDW TYDDQGKLLY PGMVESSYYP 360
MTKNSANNFP IISSTFGAAG PSCNTSSVAI QSVGKEYEWR NKENVAQNSK SLSALDSFHD 420
LYETKTDSTP QLIYEPSLYL QHFDQDEIFH GHLYQQGAAP LVIKYNNSTQ LDK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
| Publications
? help Back to Top |
- Takahashi N, et al.
Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
Curr. Biol., 2013. 23(18): p. 1812-7
[PMID:24035544] - Ge XM, et al.
Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
Plant J., 2015. 82(1): p. 138-50
[PMID:25704455] - Takahashi N,Umeda M
Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
Plant Signal Behav, 2014. 9(8): p. e29396
[PMID:25763620] - Kobayashi K, et al.
Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
Plant Physiol., 2017. 173(4): p. 2340-2355
[PMID:28193764] - Arnaud D, et al.
Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
Plant Cell, 2017. 29(3): p. 543-559
[PMID:28254779] - Zhang TQ, et al.
A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
Plant Cell, 2017. 29(5): p. 1073-1087
[PMID:28389585] - Meng WJ, et al.
Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
Plant Cell, 2017. 29(6): p. 1357-1372
[PMID:28576846] - Zhang F,May A,Irish VF
Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
Trends Plant Sci., 2017. 22(10): p. 815-817
[PMID:28886911] - Takatsuka H,Higaki T,Umeda M
Actin Reorganization Triggers Rapid Cell Elongation in Roots.
Plant Physiol., 2018. 178(3): p. 1130-1141
[PMID:30185441]
|
