PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29983.m003227
Common NameLOC8262097, RCOM_1175560
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 426aa    MW: 47441.4 Da    PI: 6.6871
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29983.m003227genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-19213263256
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + +l+ge
  29983.m003227 213 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFRLRGE 263
                    59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.11E-34212272No hitNo description
PROSITE profilePS5103222.958213270IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-32213271IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22213271IPR016177DNA-binding domain
SMARTSM003804.7E-40213276IPR001471AP2/ERF domain
PfamPF008473.0E-12214263IPR001471AP2/ERF domain
PRINTSPR003677.3E-11214225IPR001471AP2/ERF domain
PRINTSPR003677.3E-11236252IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MAAAAKNNRG KSKQGAVDTS QEWELEKGKR ETNLSIHERQ QQWKPVFGEA SMAADNRPLK  60
KIRSPERQDP IHVSSSLAHR STPFSVPSTV SSISTLPLNP PSSSGSRLSF PFAFEGQLPH  120
QFTTNTCLPY FRHPLHNQQQ QQMISFAQNQ QLAMPSDSSP SALTYQQQQQ LYQYWSDALN  180
LSPRGRMMMM NRLGADGRPL FSQPIQPINT TKLYRGVRQR HWGKWVAEIR LPRNRTRLWL  240
GTFDTAEDAA MAYDREAFRL RGENARLNFP ELFLNKEKTN PTSPQTRENP DLQASGTQSM  300
PPPPPPPQQS QGDNPDNDSG MGSSGATVSD EVQPVVEGSD TGRGEGVSGS QELVWGDMMT  360
EAWFNSISAG WGPGSPVWDD LDTNNNLLLQ SHDLPFGSPN HEQQEQHDNM GSASSSSSSS  420
FPKSFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-21212270160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29983.m003227
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002517949.10.0ethylene-responsive transcription factor ERF054
TrEMBLB9RW300.0B9RW30_RICCO; Uncharacterized protein
STRINGXP_002517949.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-58ERF family protein