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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29983.m003179 | ||||||||
Common Name | RCOM_1174080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bHLH | ||||||||
Protein Properties | Length: 246aa MW: 27802.6 Da PI: 8.2344 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.5 | 4.7e-08 | 55 | 105 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 + + +E++RR+++++ f++L +l P + ++k + + +A+++IksL+ 29983.m003179 55 TERKVIEKNRRNQMKTLFSNLNSLFPRR---NAKEaPPLPDQIDEAINHIKSLE 105 56789**********************7...555559999************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.37E-11 | 51 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.283 | 52 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-9 | 54 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 4.6E-4 | 157 | 232 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MESQVSNGKM LHVVCINENR KKPEPSSHLG TLMKMNHPSS RMAMAPSGST SSTKTERKVI 60 EKNRRNQMKT LFSNLNSLFP RRNAKEAPPL PDQIDEAINH IKSLEEKLKK LKVKKESLSA 120 RKRPFSECSD SYESASASRA PQLQIKEMGS ALEIVLISGL DNQFMFYEII RILHQEGVDI 180 ASASYSVAGN SIVYIVHAEI RESNFSFGAA KVTDRLNRFV NELSSEIEVE PELWDFNDLQ 240 PDTWAF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29983.m003179 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015573948.2 | 1e-158 | transcription factor bHLH162 | ||||
TrEMBL | B9RVY4 | 0.0 | B9RVY4_RICCO; DNA binding protein, putative | ||||
STRING | XP_002517903.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF906 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 2e-28 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 29983.m003179 |