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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29983.m003158 | ||||||||
Common Name | LOC8269152, RCOM_1173370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | SBP | ||||||||
Protein Properties | Length: 198aa MW: 22529.6 Da PI: 9.6878 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.8 | 4.8e-41 | 75 | 152 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+e+C adl++ak yhrrhkvCe h+ka+ vlv+g++qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk+++ 29983.m003158 75 CCQAEKCMADLNDAKPYHRRHKVCEYHAKAQIVLVAGIRQRFCQQCSRFHELIEFDETKRSCRRRLAGHNERRRKNTT 152 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.8E-32 | 70 | 137 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.513 | 73 | 150 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.96E-37 | 74 | 154 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.3E-31 | 76 | 149 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MEGKGKQKMM MMMGRVVKEE LAHEIDRELS DDDEYLGMGN LGGDFESNKK KKVVSGDAGG 60 RKKGSFGGGG VGMRCCQAEK CMADLNDAKP YHRRHKVCEY HAKAQIVLVA GIRQRFCQQC 120 SRFHELIEFD ETKRSCRRRL AGHNERRRKN TTESHTEGSS HRGTGTQLKD MVFGQVDDSG 180 RIKITIQENT TYKHFQIR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-37 | 67 | 149 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00634 | PBM | Transfer from PK22320.1 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29983.m003158 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040, ECO:0000305|PubMed:16914499}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002517882.1 | 1e-145 | squamosa promoter-binding protein 1 | ||||
Swissprot | Q9S7A9 | 1e-43 | SPL4_ARATH; Squamosa promoter-binding-like protein 4 | ||||
TrEMBL | B9RVW3 | 1e-143 | B9RVW3_RICCO; Squamosa promoter-binding protein, putative | ||||
STRING | XP_002517882.1 | 1e-144 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 6e-45 | squamosa promoter binding protein-like 4 |
Link Out ? help Back to Top | |
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Phytozome | 29983.m003158 |
Entrez Gene | 8269152 |