PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29983.m003125
Common NameLOC8269119, RCOM_1172140
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 294aa    MW: 33123.5 Da    PI: 9.1862
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29983.m003125genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.51.9e-34612011128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....tk..sgy 82 
                    lp+G++F+Ptd+el+ e+L+ kv+++       ++++   i+   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+    t+  + +
  29983.m003125  61 LPAGVKFDPTDQELL-EHLEGKVKSDArklhplIDEFIPtIEGEnGICYTHPEKLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKvhtdTEggETR 154
                    799************.99******9996665443332333665557**********.555666688******************745553344667 PP

            NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                    W++tgk+++v++ +g+++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  29983.m003125 155 WHKTGKTRPVFV-GGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 201
                    ************.9*************6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-3955220IPR003441NAC domain
PROSITE profilePS5100534.03661220IPR003441NAC domain
PfamPF023655.6E-1662201IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MTWCNDCSDV QTIERSSPAP SSNNTSVIAQ RHKESLLRCC PSCGHQIKCP DQARIHDLPG  60
LPAGVKFDPT DQELLEHLEG KVKSDARKLH PLIDEFIPTI EGENGICYTH PEKLPGVSKD  120
GLVRHFFHRP SKAYTTGTRK RRKVHTDTEG GETRWHKTGK TRPVFVGGKV KGYKKILVLY  180
TNYGKQRKPE KTNWVMHQYH LGNNEEEKDG ELVVSKVFYQ TQPRQCGSIM KDSIPSKLKG  240
QSVHEVANNS LKNATLVEYY TPSFISFDQG GQTRPNPPQL LPHFAVHDGS SFIP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29983.m003125
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002517849.10.0NAC domain-containing protein 73
SwissprotO494591e-133NAC73_ARATH; NAC domain-containing protein 73
TrEMBLB9RVT00.0B9RVT0_RICCO; Transcription factor, putative
STRINGXP_002517849.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-126NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]