PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29983.m003123
Common NameLOC8269117, RCOM_1172120
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HD-ZIP
Protein Properties Length: 150aa    MW: 17362.8 Da    PI: 9.79
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29983.m003123genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.3e-182072456
                   -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   + ++ +eql++Le+ F+ n++++ae + eLA++lg++ rqV +W+qNrRa+++
  29983.m003123 20 KKRLAREQLQILESSFNANQKLKAEFKLELARQLGVPPRQVAIWYQNRRARHR 72
                   556889*********************************************98 PP
2HD-ZIP_I/II90.91.5e-2920110393
    HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    k+rl++eq+++LE+sF++++kL+ e K elar+Lg+ prqva+W+qnrRAR++    E++y+ +++++ ++++e+ +Lekev+ L+ el++
  29983.m003123  20 KKRLAREQLQILESSFNANQKLKAEFKLELARQLGVPPRQVAIWYQNRRARHRVETKEQEYNNIQQELRNVSAEKIKLEKEVDMLKYELNK 110
                    9*************************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.9851474IPR001356Homeobox domain
SMARTSM003894.9E-141678IPR001356Homeobox domain
SuperFamilySSF466894.6E-171683IPR009057Homeodomain-like
CDDcd000861.27E-112072No hitNo description
PfamPF000468.2E-162072IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.2E-182281IPR009057Homeodomain-like
PRINTSPR000316.2E-54554IPR000047Helix-turn-helix motif
PROSITE patternPS0002704972IPR017970Homeobox, conserved site
PRINTSPR000316.2E-55470IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MNSHFHQSQT PSQHSSKPSK KRLAREQLQI LESSFNANQK LKAEFKLELA RQLGVPPRQV  60
AIWYQNRRAR HRVETKEQEY NNIQQELRNV SAEKIKLEKE VDMLKYELNK AHEMLILAST  120
PSATSLLSSS ASDDDICQLI LTCKPHLWLA
Cis-element ? help Back to Top
SourceLink
PlantRegMap29983.m003123
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002517847.27e-93LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-52
TrEMBLB9RVS81e-106B9RVS8_RICCO; Homeobox protein, putative
STRINGXP_002517847.11e-106(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1653559
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.15e-22homeobox protein 52