PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29974.m000242 | ||||||||
Common Name | RCOM_1159190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bHLH | ||||||||
Protein Properties | Length: 190aa MW: 21476.2 Da PI: 9.4221 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.5 | 2.4e-08 | 83 | 130 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + k + a +L + ++Y++sLq 29974.m000242 83 SHSLAERVRRGKINERLRCLQDIVPGC----YKTMGMAVMLDEIINYVQSLQ 130 8*************************9....3559999***********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-16 | 77 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.27E-9 | 77 | 134 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.1E-16 | 79 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.097 | 79 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-5 | 83 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-8 | 85 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MPVSSHQLIS TPGTDQSEFL ETKKRKALDV SESSSFNSSP QVSENGKGKN NSRRGKRTKS 60 KEDDEKPKEV VHVRARRGQA TDSHSLAERV RRGKINERLR CLQDIVPGCY KTMGMAVMLD 120 EIINYVQSLQ NQVEFLSMKL TAASTFYDFN SETDAIETMQ RAKAQEAKEI ERVMKEGYGG 180 LTNFHPTWSL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29974.m000242 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM234273 | 2e-89 | KM234273.1 UNVERIFIED: Populus alba x Populus glandulosa cultivar Hyeonsasi brassinosteroid sinaling protein-like mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025015386.1 | 1e-141 | transcription factor BEE 1, partial | ||||
Swissprot | Q8GWK7 | 5e-71 | BEE3_ARATH; Transcription factor BEE 3 | ||||
TrEMBL | B9T1P0 | 1e-141 | B9T1P0_RICCO; DNA binding protein, putative | ||||
STRING | XP_002532159.1 | 1e-141 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3360 | 34 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73830.1 | 2e-73 | BR enhanced expression 3 |
Link Out ? help Back to Top | |
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Phytozome | 29974.m000242 |
Publications ? help Back to Top | |||
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