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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29968.m000654 | ||||||||
Common Name | LOC8272303, RCOM_1149760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | C2H2 | ||||||||
Protein Properties | Length: 249aa MW: 27047.2 Da PI: 6.8794 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 96 | 118 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H 29968.m000654 96 FSCNYCRRKFYSSQALGGHQNAH 118 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.86E-6 | 94 | 124 | No hit | No description |
PROSITE profile | PS50157 | 11.385 | 96 | 123 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 98 | 118 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MTPPNSILES ENESEISGQV ASNVSLQEPS SDPSKDGNTP CSSLTDLNRL QQSPMPVSLN 60 LSLTFNASDI ELKGTGETSS EAAAPSPAAP TMPRVFSCNY CRRKFYSSQA LGGHQNAHKR 120 ERTMAKRAMR MGIFSDRYTS LASLPLHGSA YRNLGIKAHS AMHQNIIPSQ KPPDHTRGGA 180 KFEQGYYGMP VFMEDDDVGL HWPGSFRQVA GSVGGNIDLQ YAQSPNTNIV EMTPQLRTDS 240 SSPDLTLKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29968.m000654 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002527542.1 | 0.0 | zinc finger protein 4 | ||||
Swissprot | Q39263 | 1e-46 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | B9SNH3 | 0.0 | B9SNH3_RICCO; Zinc finger protein, putative | ||||
STRING | XP_002527542.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1323 | 31 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 2e-48 | zinc finger protein 4 |
Link Out ? help Back to Top | |
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Phytozome | 29968.m000654 |
Entrez Gene | 8272303 |
Publications ? help Back to Top | |||
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