PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29957.m001411
Common NameLOC8282744, RCOM_1134940
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family LBD
Protein Properties Length: 233aa    MW: 25336.7 Da    PI: 8.1239
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29957.m001411genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.11.1e-41461451100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                    +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+k+l ++p+++r d+++slvyeA+ r+rdPvyG++g i++lqqq+++l+ael +
  29957.m001411  46 PCAACKLLRRRCAEECPFSPYFSPHEPRKFAAVHKVFGASNVSKMLMEVPDSQRADTANSLVYEANLRIRDPVYGCMGAISALQQQIQSLQAELTA 141
                    7**********************************************************************************************9 PP

         DUF260  97 lkee 100
                    +++e
  29957.m001411 142 VRSE 145
                    9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.65245146IPR004883Lateral organ boundaries, LOB
PfamPF031958.0E-4246143IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSTDRDRFDE IGKNFNREIS DPDASPPMGR RHALTPPPGF LNTVTPCAAC KLLRRRCAEE  60
CPFSPYFSPH EPRKFAAVHK VFGASNVSKM LMEVPDSQRA DTANSLVYEA NLRIRDPVYG  120
CMGAISALQQ QIQSLQAELT AVRSEIIKYK YREATSNFFP STAHDALVSS GSLLSITAEP  180
SKPTLTHPPP PPPPPPTSPP APPPSTLVSS SSISTLYTPS PSSMGYSSIN FQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-434615311118LOB family transfactor Ramosa2.1
5ly0_B4e-434615311118LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29957.m001411
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707801e-108AB970780.1 Populus tremula x Populus tremuloides PtxtLBD15a mRNA for LOB domain-containing protein 15, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002517720.11e-170LOB domain-containing protein 15
SwissprotQ9AT612e-75LBD13_ARATH; LOB domain-containing protein 13
TrEMBLB9RVF11e-168B9RVF1_RICCO; LOB domain-containing protein, putative
STRINGXP_002517720.11e-169(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22983486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.13e-74LOB domain-containing protein 15
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]