PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29955.m001177 | ||||||||
Common Name | LOC8286238, RCOM_1130970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bZIP | ||||||||
Protein Properties | Length: 231aa MW: 26457.1 Da PI: 5.2779 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 50.8 | 3.5e-16 | 149 | 207 | 3 | 60 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk.eleelkkevaklk 60 + +++rr++kNRe+A rsR+RK+a++ eLe v +Le+eN +L++ e+e+ k+ +++l 29955.m001177 149 SQQKQRRMIKNRESAARSRERKQAYTMELESLVTQLEEENARLRSeEVEQSKERCKELM 207 6789***************************************9736999999999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.2E-15 | 144 | 208 | No hit | No description |
SMART | SM00338 | 1.1E-11 | 147 | 212 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.289 | 149 | 201 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.8E-14 | 149 | 207 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 2.23E-17 | 151 | 192 | No hit | No description |
SuperFamily | SSF57959 | 1.69E-10 | 151 | 197 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 154 | 169 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MASSKVMATA TTSTTNTDLP REPSLCSSLS TLLADLQNQS MYTYTNESGG ASVTRADDEA 60 WEGMTLEDFL TKAGAVREED VREAYYDDCV DIVNSNNNNS NKYNKIENNN NNNNNNNDNY 120 VNNESKGQLN QGRHKRRAVV EDAPLDKASQ QKQRRMIKNR ESAARSRERK QAYTMELESL 180 VTQLEEENAR LRSEEVEQSK ERCKELMENL IPVVEKRRPP RVIRRVNSVQ W |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29955.m001177 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002518841.1 | 1e-169 | bZIP transcription factor 12 | ||||
TrEMBL | B9RYM2 | 1e-168 | B9RYM2_RICCO; G-box-binding factor, putative | ||||
STRING | XP_002518841.1 | 1e-168 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2028 | 34 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44080.1 | 7e-32 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | 29955.m001177 |
Entrez Gene | 8286238 |