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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
29950.m001173 |
Common Name | LOC8260946, RCOM_1122450 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family |
NAC |
Protein Properties |
Length: 365aa MW: 40870.1 Da PI: 8.0941 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
29950.m001173 | genome | JCVI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 170.9 | 3.9e-53 | 8 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95
lppGfrFhPtdeel+ +yLkkk++++++++ ++i++vdiyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk ++++
29950.m001173 8 LPPGFRFHPTDEELILHYLKKKIASTPFPV-SIIADVDIYKSDPWDLPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKVIVASt 102
79****************************.89***************988899***************************************987 PP
NAM 96 ......kgelvglkktLvfykgrapkgektdWvmheyrl 128
+e++g+kk Lvfykgr pkg kt+W+mheyrl
29950.m001173 103 vaaggvVQENIGVKKALVFYKGRPPKGIKTNWIMHEYRL 141
8877665666***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 365 aa
Download sequence Send
to blast |
MKNPQSNLPP GFRFHPTDEE LILHYLKKKI ASTPFPVSII ADVDIYKSDP WDLPAKAAFG 60 EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKVIVA STVAAGGVVQ ENIGVKKALV 120 FYKGRPPKGI KTNWIMHEYR LADAPTCNHK PVRPKDSSTT MRLDDWVLCR IYKKTHASPP 180 SAVAAAAASD HDQEEEEEEE EQFVKENILP SLKTPIANKS LIPQKSSSFS NLLDAMDYSI 240 LSSFLSDNQF NPTGYDSIPA LNTTAISDQP LLNNFNPTTN SSGSSYLLQK LPHQLNNAPL 300 TPTMENKLKR PLSIIDEDLH QYPSKKLVSS CSFTNSTSQT DHMAHYQYNF LNQQLLLSPH 360 LQFQG
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 3e-71 | 5 | 178 | 14 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-71 | 5 | 178 | 14 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-71 | 5 | 178 | 14 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-71 | 5 | 178 | 14 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-71 | 5 | 178 | 17 | 172 | NAC domain-containing protein 19 |
3swm_B | 3e-71 | 5 | 178 | 17 | 172 | NAC domain-containing protein 19 |
3swm_C | 3e-71 | 5 | 178 | 17 | 172 | NAC domain-containing protein 19 |
3swm_D | 3e-71 | 5 | 178 | 17 | 172 | NAC domain-containing protein 19 |
3swp_A | 3e-71 | 5 | 178 | 17 | 172 | NAC domain-containing protein 19 |
3swp_B | 3e-71 | 5 | 178 | 17 | 172 | NAC domain-containing protein 19 |
3swp_C | 3e-71 | 5 | 178 | 17 | 172 | NAC domain-containing protein 19 |
3swp_D | 3e-71 | 5 | 178 | 17 | 172 | NAC domain-containing protein 19 |
4dul_A | 3e-71 | 5 | 178 | 14 | 169 | NAC domain-containing protein 19 |
4dul_B | 3e-71 | 5 | 178 | 14 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |