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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
29950.m001171 |
Common Name | LOC8260944, RCOM_1122330 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family |
NAC |
Protein Properties |
Length: 382aa MW: 43227.2 Da PI: 6.3185 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
29950.m001171 | genome | JCVI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 185.5 | 1.3e-57 | 16 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96
lppGfrFhPtdee++++yL++kv ++ +++ +i evd++k+ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkdke+++ k
29950.m001171 16 LPPGFRFHPTDEEIITHYLTEKVMNSGFSA-CAIGEVDLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATDSGYWKATGKDKEIYKGK 110
79*************************999.67***************99999*****************************************99 PP
NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129
+ lvg+kktLvfykgrapkgekt+Wvmheyrle
29950.m001171 111 NCLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 143
999****************************85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 382 aa
Download sequence Send
to blast |
MEEAIVVNKG EDLIDLPPGF RFHPTDEEII THYLTEKVMN SGFSACAIGE VDLNKCEPWD 60 LPKKAKMGEK EWYFFCQRDR KYPTGMRTNR ATDSGYWKAT GKDKEIYKGK NCLVGMKKTL 120 VFYKGRAPKG EKTNWVMHEY RLEGKFSYYN LSKAAKDDWV VCRVFHKSIG IKKTSIQDLL 180 RVNSFGDDFL DYSSLPPLMD PPNSSRPSSS FNSGDDDFKA MTSRTMDGNY LSQFSTTMVT 240 NHNQNYFHHQ PSNSSYQQQP SSIFYPQIPS FTFQTTPNMS AAGYFQNSTF GANDQTLLRA 300 LAGNTRIEPS RQEKLCKVEQ FSSNHSMATL SQDTGLSTDV NTAAEISSVV VSEQEIGSNN 360 KVYNDLDQGP SSVADLDSLW DY
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 2e-54 | 14 | 167 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-54 | 14 | 167 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-54 | 14 | 167 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-54 | 14 | 167 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-54 | 14 | 167 | 18 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-54 | 14 | 167 | 18 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-54 | 14 | 167 | 18 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-54 | 14 | 167 | 18 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-54 | 14 | 167 | 18 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-54 | 14 | 167 | 18 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-54 | 14 | 167 | 18 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-54 | 14 | 167 | 18 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-54 | 14 | 167 | 15 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-54 | 14 | 167 | 15 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KR605153 | 0.0 | KR605153.1 Manihot esculenta NAC transcription factors 15 mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G18270.1 | 1e-118 | Arabidopsis NAC domain containing protein 87 |