PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29933.m001453
Common NameRCOM_1096540
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 368aa    MW: 41861.1 Da    PI: 4.4028
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29933.m001453genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.39.8e-151360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l+ +++ +G   W+  ++  g+ R++k+c++rw +yl
    29933.m001453 13 KGTWSAEEDQRLIAYINGYGIQKWNEMPKDAGLLRSGKSCRLRWMNYL 60
                     799*****************************99************97 PP
2Myb_DNA-binding59.85.9e-1966111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eEde+++ ++++lG++ W+tIa +++ gRt++++k++w+++l
    29933.m001453  66 RGNFSSEEDEIILSLHAMLGNR-WSTIATKLP-GRTDNDIKNHWHTHL 111
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.155860IPR017930Myb domain
SuperFamilySSF466893.88E-2911107IPR009057Homeodomain-like
SMARTSM007171.7E-111262IPR001005SANT/Myb domain
PfamPF002491.9E-121360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-221467IPR009057Homeodomain-like
CDDcd001675.61E-91560No hitNo description
PROSITE profilePS5129428.60461115IPR017930Myb domain
SMARTSM007175.8E-1765113IPR001005SANT/Myb domain
PfamPF002493.3E-1666111IPR001005SANT/Myb domain
CDDcd001671.13E-1168111No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2668114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MMTLDFDKKP MNKGTWSAEE DQRLIAYING YGIQKWNEMP KDAGLLRSGK SCRLRWMNYL  60
RPSIKRGNFS SEEDEIILSL HAMLGNRWST IATKLPGRTD NDIKNHWHTH LKKRSVVREI  120
KLHVLHKSEE ELQENNYSED GDLSCFTSLN ASNSPESSTI QFSSELSHSA GFSSINSNSG  180
DEADHNDIQA IEQNIALFEL HGDFQCLQGQ SFSLDDLDVM QDPMWLDEEY TGCPYVSPGG  240
ASNNSSEYSS LWTDNNHQII EENVNFSELS KDQFLSSRME LCYTAEDNGA TTYQVRVEGS  300
VYSYTSQIAV ENDLYDYPVI GSNIGQAIEE NILLSKLSEE RPNVLWEKEQ SSPMKGFQKT  360
DQDYGVYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-291111425127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29933.m001453
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025014118.10.0transcription factor MYB4-like
TrEMBLB9SFE20.0B9SFE2_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002524711.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-50myb domain protein 4