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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29929.m004612 | ||||||||
Common Name | LOC8286758, RCOM_1078980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | TCP | ||||||||
Protein Properties | Length: 302aa MW: 32604.4 Da PI: 9.9252 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 124.5 | 1.1e-38 | 57 | 147 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..k 89 a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ a++s+s+++ns s+ + 29929.m004612 57 APKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALaAAGASVSQQGNSVSAglH 147 789******************************************************************9996555555555544333542 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.9E-31 | 62 | 163 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.458 | 63 | 117 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
METKGPNNPH KQDLPTFLNP LQKETMAENS SSSSKTAEIK DFQIMIANKD DNKKQLAPKR 60 SSNKDRHKKV DGRGRRIRMP ALCAARIFQL TRELGHKSDG ETIQWLLQQA EPSIIAATGT 120 GTIPASALAA AGASVSQQGN SVSAGLHSKM EGIGPSVGSR DRANWTMMNS NLGRCNVTNG 180 MWPSSVGGIG AGYISNSSQS AMNFGNESAN ALPKFGFHGV ELPNINMGLM SFYSMFNATN 240 QQVPGLELGL SQDGHTGVMN SQALSQFYQQ MGQNRTGLNS LVQQQQHQQQ PPDKDDSQGS 300 RQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00641 | PBM | Transfer from Manes.12G007700 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29929.m004612 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002514876.1 | 0.0 | transcription factor TCP20 | ||||
Refseq | XP_015572116.1 | 0.0 | transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 6e-72 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | B9RMA7 | 0.0 | B9RMA7_RICCO; Transcription factor, putative | ||||
STRING | XP_002514876.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3339 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 2e-71 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | 29929.m004612 |
Entrez Gene | 8286758 |