PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29927.m000599
Common NameRCOM_1074250
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 205aa    MW: 23657.6 Da    PI: 6.54
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29927.m000599genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-151259148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W +eEd++l+ +v+ +G g+W+t++++ g+ R +k+c++rw +yl
    29927.m000599 12 KGLWKPEEDLILKTYVQTHGEGNWATVSEKSGLMRGGKSCRLRWKNYL 59
                     678*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-21662IPR009057Homeodomain-like
PROSITE profilePS5129423.919763IPR017930Myb domain
SMARTSM007172.9E-121161IPR001005SANT/Myb domain
PfamPF002498.3E-141259IPR001005SANT/Myb domain
SuperFamilySSF466893.73E-201486IPR009057Homeodomain-like
CDDcd001679.59E-101559No hitNo description
Gene3DG3DSA:1.10.10.603.4E-66386IPR009057Homeodomain-like
SMARTSM007171864137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MENKEVKPRI KKGLWKPEED LILKTYVQTH GEGNWATVSE KSGLMRGGKS CRLRWKNYLR  60
PNIKRGGMSQ EEEDLIIRMH KLLGNRKIID SNTCQNDTDK ENMNRNKRQR NSRPVCSASP  120
KGIAEEINEK NKEKEESSSF TDAWIQGAQS MNYYIESPVE QANNYAFVYD EEPFVACLDS  180
FVLFESIGYN GGETYSQVDL QPFMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-1248619100MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29927.m000599
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579667.11e-146transcription factor MYB82
SwissprotQ9LTF78e-46MYB82_ARATH; Transcription factor MYB82
TrEMBLB9SMF51e-152B9SMF5_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002527174.11e-152(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.11e-45myb domain protein 82