PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29912.m005526
Common NameLOC8284799, RCOM_1053010
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HSF
Protein Properties Length: 337aa    MW: 37322.9 Da    PI: 4.8874
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29912.m005526genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1118.3e-35131052103
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    F++k+y+i++d+++++li+w + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ +          weF++++F +g+k+ l++i
  29912.m005526  13 FVMKTYQIVNDPTTDTLITWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDI---------WEFANEWFLRGQKQFLKNI 99 
                    9***************************************************************9876.........******************* PP

                    XXXXXX CS
   HSF_DNA-bind  98 krkkse 103
                     r+k++
  29912.m005526 100 VRRKHS 105
                    **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.3E-499102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.1E-3210102IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.4E-3611102IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.5E-181336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-2913102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-185163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-186476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MESTNSSNLI APFVMKTYQI VNDPTTDTLI TWGKANNSFI VVDPLDFSQR ILPAYFKHNN  60
FSSFVRQLNT YGFRKVDPDI WEFANEWFLR GQKQFLKNIV RRKHSKSSCK IEDFDNEELV  120
MEIARLKQEQ RVLDEELEGM NKRLEATERR PQQMMAFLYK VVEDPDILPR MMLQKEQTKQ  180
LNSDKKRRLM ISSSSSSSGG AAVSSSVKSE EEEEGNIGAI SSPESGFGID NNNNYNNLYQ  240
SSPSPETNFI GWLGDGNYGC AEVAPAPITG GIGNSVKLAV SPPPQMPVNG IICYGGGSGG  300
NGGDRGSQTS YFGELATAVE AKPPPPPYPF SLLGGDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A3e-25101027110Heat shock factor protein 1
5hdn_A3e-25101027110Heat shock factor protein 1
5hdn_B3e-25101027110Heat shock factor protein 1
5hdn_C3e-25101027110Heat shock factor protein 1
5hdn_D3e-25101027110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29912.m005526
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514309.10.0heat stress transcription factor C-1
SwissprotQ9LV525e-95HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLB9RKR40.0B9RKR4_RICCO; DNA binding protein, putative
STRINGXP_002514309.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-93heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]