PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

bHLH

Protein Properties

Length: 363aa MW: 39841.3 Da PI: 6.7049

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29912.m005485	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00048	226	264	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq 29912.m005485 226 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 264 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.611	214	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.05E-6	224	268	No hit	No description
SuperFamily	SSF47459	4.06E-10	224	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-7	228	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MNRGVLQTSP AVEQIIAGNP IWWNINNMRP PTHQQTSPFV PPPNLFPQFI PSSSSNNSSS 60 SSSSSLTIPS WHDNNQEQLP DSWSQLLLGG LVDEDKGNMT SHFQTKKFEN WEEQMLHHQA 120 SSIVSPVVDV KQENSATSYV YGHANSEDFQ TAKPSWSQMI PPPVSSPKSC VTTSFSSNML 180 DFSTNKGDCR HPPPDRSSEC NSTATGGAVK KARVQPSSTQ STFKVRKEKL GDRITALHQL 240 VSPFGKTDTA SVLLEAIGYI RFLQNQIEAL SLPYLGSGSS NMRQQQQSVQ GERNCIFPED 300 PGQLLNDNCI KRKGASDQQD CNEEPKKDLR SRGLCLVPVS CTLQVGSDNG ADYWAPALGG 360 GFR

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MNRGVLQTSP AVEQIIAGNP IWWNINNMRP PTHQQTSPFV PPPNLFPQFI PSSSSNNSSS  60
SSSSSLTIPS WHDNNQEQLP DSWSQLLLGG LVDEDKGNMT SHFQTKKFEN WEEQMLHHQA  120
SSIVSPVVDV KQENSATSYV YGHANSEDFQ TAKPSWSQMI PPPVSSPKSC VTTSFSSNML  180
DFSTNKGDCR HPPPDRSSEC NSTATGGAVK KARVQPSSTQ STFKVRKEKL GDRITALHQL  240
VSPFGKTDTA SVLLEAIGYI RFLQNQIEAL SLPYLGSGSS NMRQQQQSVQ GERNCIFPED  300
PGQLLNDNCI KRKGASDQQD CNEEPKKDLR SRGLCLVPVS CTLQVGSDNG ADYWAPALGG  360
GFR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29912.m005485

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002514268.1	0.0	transcription factor bHLH68
Swissprot	Q8S3D1	1e-107	BH068_ARATH; Transcription factor bHLH68
TrEMBL	B9RKM4	0.0	B9RKM4_RICCO; Transcription factor, putative
STRING	XP_002514268.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1223	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	1e-108	bHLH family protein

Link Out ? help Back to Top
Phytozome	29912.m005485
Entrez Gene	8268334

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]