PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29912.m005376
Common NameLOC8272572, RCOM_1047670
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 283aa    MW: 31292.4 Da    PI: 9.5841
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29912.m005376genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.7e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+e l  +v+++G+g Wk I +          R+  ++k++w++
    29912.m005376  5 KQKWTAEEEEALRAGVAKHGTGKWKNIQKDPEfnpflFSRSNIDLKDKWRN 55
                     79*****************************999**989**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.61162IPR017930Myb domain
SuperFamilySSF466891.59E-15258IPR009057Homeodomain-like
SMARTSM007174.1E-9459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-15556IPR009057Homeodomain-like
PfamPF002491.5E-9555IPR001005SANT/Myb domain
CDDcd116602.40E-21656No hitNo description
SMARTSM005261.5E-15119184IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.107.9E-15120195IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.125121189IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF466891.59E-15123154IPR009057Homeodomain-like
PfamPF005385.5E-11123182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGNPKQKWTA EEEEALRAGV AKHGTGKWKN IQKDPEFNPF LFSRSNIDLK DKWRNMSVSA  60
GEKSRTPKPK ANSDIPPATK AVSPIPVSNL QSSASVITTS PLDEADPMVD DSTKTFGDAK  120
TAPKYNAMIF EAISALNKQH GADTTAIVSY IEQRQVVPQN FRRQLSSRLR RLVAQEKLEK  180
VQNCFKIKNN SSLETKTPTP KQKDVRPRHL QSTSCINSGD TMEEAAVAAA YRIAEAENKS  240
FVAAEAVKEA ERVSKMAEDT DSLLQLAKEI FEKCSRGEVV LIA
Cis-element ? help Back to Top
SourceLink
PlantRegMap29912.m005376
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514135.10.0telomere repeat-binding factor 4
TrEMBLB9RK910.0B9RK91_RICCO; DNA binding protein, putative
STRINGXP_002514135.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-58MYB_related family protein