PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29912.m005322
Common NameRCOM_1046780
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GATA
Protein Properties Length: 312aa    MW: 35417.8 Da    PI: 9.3752
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29912.m005322genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.2e-19180213134
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                    Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  29912.m005322 180 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 213
                    *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.99E-13173213No hitNo description
SMARTSM004013.9E-19174227IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.624174210IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-15178213IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.11E-12179207No hitNo description
PfamPF003204.2E-17180213IPR000679Zinc finger, GATA-type
PROSITE patternPS003440180205IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MTPTYHSSFP PFTIDLNEDQ HHHQLIFCSK TTTEDASSSS SISYPIFINP PQEEVGYYHK  60
ELQPLHHQEV DNIYASHGRS WDHRIIKNEN ENGQELSVCK KEDKSTSIED QRDNSSVKWM  120
SSKMRLMRKM MTTDQTVNTT QHTSSMHKLE DKEKSRSLPL QDDYSSKNLS DNSNNTIRVC  180
SDCNTTKTPL WRSGPRGPKS LCNACGIRQR KARRALAAAQ ASANGTIFAP DTAAMKTNKV  240
QNKEKRTNNS HLPFKKRCKF TAQSRGSRKK LCFEDLSSTI LSKNSAFQQL FPQDEKEAAI  300
LLMALSYGLV HG
Cis-element ? help Back to Top
SourceLink
PlantRegMap29912.m005322
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025012279.10.0GATA transcription factor 21
TrEMBLB9RK630.0B9RK63_RICCO; Uncharacterized protein
STRINGXP_002514107.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.13e-31cytokinin-responsive gata factor 1