PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29908.m006268
Common NameLOC8268422, RCOM_1039610
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 608aa    MW: 65171 Da    PI: 6.5854
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29908.m006268genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.7e-09205249144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                      r++W++ Ed+ l+ av+++G g+W+ I r      Rt+ q+  rw
    29908.m006268 205 RKPWSEAEDLELIAAVQKYGEGNWANILRSEFtWDRTASQLSQRW 249
                      789************************986555556666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.207200257IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-13201255IPR009057Homeodomain-like
SuperFamilySSF466899.66E-14201274IPR009057Homeodomain-like
SMARTSM007176.0E-9204255IPR001005SANT/Myb domain
PfamPF002491.4E-7205249IPR001005SANT/Myb domain
CDDcd116602.49E-13206254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MIEKSKKHNS RKGLISEEDI SSLLQRYTAN TVLALLQEVA QFEGVKIDWN ALVKKTTTGI  60
KNVREYQMLW RHLAYKHTLI DNLDDGAQPL DDDSDLEYEL EAFPDVSSEA SAEAAACVKV  120
LIASGATSDS THPNSATVEA PLTINIPNGQ SARAISENSQ PATMRGMNIT VPVSIQKQPL  180
PTVASTEVFD GNGLGNGNIP PRRKRKPWSE AEDLELIAAV QKYGEGNWAN ILRSEFTWDR  240
TASQLSQRWA IIRKRHGNWN PVGNTSGVQL SEEWRAARHA MNLALDPPVK NKFTNNISGE  300
ATPAQHQSQR PFAAKSSPMV PLGSAPKSQI AVKRPAKPDL SSDPVRATAV AAGARIATQS  360
DAASLLKAAQ AKNAVHIMPT GGSSMKSALP GGASNHSEAH PNVHTNDLAA GSRSTLPVVS  420
PSAIRPAASS TVQHIPSISD TAKNISAKQF NAELPARKDT ETAGAIKILS EDAKEQQVKE  480
HGACVSGNEL SKQVQEEKAA FPNREAECKT QLAVSESSSA ASKLEMADSN MMDVLGKPAE  540
GSQNSNSNII TCLSVKTEDS MSAIQVNGDK QITSDKPDRI SMAIDKFSEK IEAVSKSEPD  600
TVMTEGES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200206PRRKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMap29908.m006268
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514048.10.0uncharacterized protein LOC8268422 isoform X2
TrEMBLB9RJX90.0B9RJX9_RICCO; DNA binding protein, putative
STRINGXP_002514048.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.21e-71MYB_related family protein