PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29908.m006255
Common NameLOC8268409, RCOM_1039380
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 246aa    MW: 26786.1 Da    PI: 8.9774
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29908.m006255genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH469.7e-154794254
                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                   +++h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++v+++k+L
  29908.m006255 47 CKSHKEAERRRRQRINAHLSTLRTLLPST-----TKTDKASLLAEVVHHVKEL 94
                   689*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.7074594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-124794IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-144897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.18E-134897No hitNo description
SuperFamilySSF474597.2E-1449101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-1351100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2609.7E-5137186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MLPAAGLDNY NQNVYLREPC LVNVMDAGES ILSSSSSRSE KKSTDPCKSH KEAERRRRQR  60
INAHLSTLRT LLPSTTKTDK ASLLAEVVHH VKELRKQATS QVARGGGETE LPDQQYWPFP  120
GESDEASLSY CDGPESKTMR VSVCCDDRPG LNQELADAIR SVHARAVRAE MMTVGGRTKS  180
VVVVQWGTGG GGRGGEEDVG VLRRAIKSVV ENRGAGSSGP GLLAHGNKRV RDYGDEFGIK  240
KNERVI
Cis-element ? help Back to Top
SourceLink
PlantRegMap29908.m006255
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514035.10.0transcription factor bHLH30
TrEMBLB9RJW60.0B9RJW6_RICCO; DNA binding protein, putative
STRINGXP_002514035.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114412834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.12e-21bHLH family protein