PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29908.m006193
Common NameLOC8274127, RCOM_1032360
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 441aa    MW: 49033.6 Da    PI: 9.5203
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29908.m006193genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.1e-06207229223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    +CpdCg+ F   +nL+ H+ + H
  29908.m006193 207 SCPDCGEIFVKAENLELHQAVrH 229
                    8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.4E-4205225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280206229IPR007087Zinc finger, C2H2
PROSITE profilePS501578.954206234IPR007087Zinc finger, C2H2
SuperFamilySSF563992.97E-23231440No hitNo description
Gene3DG3DSA:3.90.228.101.1E-15232439IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MAKPKHSRKP TKDINQNQHK KTEKPPSWIV VRGLFPCKDL QTHQQQQQQQ QQQLKQEQQQ  60
QQKQEHQQHK KEKKHHQNRE QASEESSKKC KKIKCSGSLC SNTKVMHRPE TASPELQRKR  120
ASMALTSSSN GASSRSMKAP LSEISNGVLS STNSSLSASS NSSSMSNAGS FRGMPFRRFS  180
GCYECRMVVD PVLGFTRDPS LRSSICSCPD CGEIFVKAEN LELHQAVRHA VSELGPEDTS  240
KNIVEIIFQS SWLKKQAPVC QIDRILKVHN TQRTISKFEE YRDSIKAKAT KLPKKYPRCI  300
ADGNELLRFY CTSFTCSLGL NGSNNLCNSI PHCNVCSIIK SGFKESSTGV VNGNGILTTA  360
TSGKAHDEAA ISEDKSDGNS ERRAMLVCRV IAGRVKKSME GNMEEYDSVA GAVGVYSNLD  420
ELYVFNPKAI LPCFVVIYSG F
Cis-element ? help Back to Top
SourceLink
PlantRegMap29908.m006193
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513814.10.0uncharacterized protein LOC8274127
TrEMBLB9RJ950.0B9RJ95_RICCO; Nucleic acid binding protein, putative
STRINGXP_002513814.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84732128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.16e-95C2H2-like zinc finger protein