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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
29908.m006082 |
| Common Name | LOC8281695, RCOM_1037430 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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| Family |
HD-ZIP |
| Protein Properties |
Length: 268aa MW: 31204.6 Da PI: 5.0483 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 29908.m006082 | genome | JCVI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.5 | 5.6e-19 | 59 | 112 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k
29908.m006082 59 KKRRLSMDQVKALEKNFEVENKLEPERKIRLAEELGLQPRQVAIWFQNRRARWK 112
56689************************************************9 PP
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| 2 | HD-ZIP_I/II | 125.2 | 2.9e-40 | 58 | 150 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrls +qvk+LE++Fe e+kLeperK +la+eLglqprqva+WFqnrRAR+ktkqlE++y +Lk++y+alk + ++Le+++e+L+ +lke
29908.m006082 58 EKKRRLSMDQVKALEKNFEVENKLEPERKIRLAEELGLQPRQVAIWFQNRRARWKTKQLEREYVTLKTNYEALKLDYNNLERDNESLNLQLKE 150
69**************************************************************************************99987 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009637 | Biological Process | response to blue light |
| GO:0030308 | Biological Process | negative regulation of cell growth |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0048573 | Biological Process | photoperiodism, flowering |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 268 aa
Download sequence Send
to blast |
MKRFSSPESF AALLSISSSK EEKTTQKSNQ VYSREFQAML DSLEEEDCTE ETTLTTTEKK 60
RRLSMDQVKA LEKNFEVENK LEPERKIRLA EELGLQPRQV AIWFQNRRAR WKTKQLEREY 120
VTLKTNYEAL KLDYNNLERD NESLNLQLKE LKAKMREGNA ESSQSVKEEC PVSESENNAS 180
VQSQSHEFSD NNNSNGSFKD NISDLSSHTL MNWIQLSDSR AILGNGYQVY QPHLVKLEEH 240
HSLFNIEESC NFLSVDQAPT LHWHFTEQ
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 106 | 114 | RRARWKTKQ |
