PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29905.m000443
Common NameLOC8289049, RCOM_1026740
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TCP
Protein Properties Length: 377aa    MW: 41949.5 Da    PI: 7.8684
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29905.m000443genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.82.8e-32512022129
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssas....nsssg.. 88 
                     g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ ++    +     ss++    +s+ +  
  29905.m000443  51 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDKLGLNQPSKVVDWLLNAAKHEIDELPPLPMPPMNFGlnhQ---MLSSHElgasQSN-Keg 142
                    689*************************************************************888875554321...2222211111122.134 PP

            TCP  89 ...................kaaksaakskksqksaasalnlakesrakarararertrek 129
                                       +  +s+a  + ++k+ a  +   ke   k +++ +++++e+
  29905.m000443 143 fkvnsssinwddqggltrpNFWNSDALLRGKSKEVARDSVNEKENWTKRNEEDEQESNEE 202
                    555555566666667777633333333333333443333333333344444433344443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.03553111IPR017887Transcription factor TCP subgroup
PfamPF036342.2E-3053198IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MINNSKEEDS PTKKEGSTRD HGKITSKASS STSTPWLRLK DPRIVRVSRA FGGKDRHSKV  60
CTIRGLRDRR VRLSVPTAIQ LYDLQDKLGL NQPSKVVDWL LNAAKHEIDE LPPLPMPPMN  120
FGLNHQMLSS HELGASQSNK EGFKVNSSSI NWDDQGGLTR PNFWNSDALL RGKSKEVARD  180
SVNEKENWTK RNEEDEQESN EEGNNSGRTQ VPLSSTSLFP RATHSSTWAA GFINNPMPYG  240
SFLQLEHPNF PFSHMGSHAF SNQTDDLHNL NAVPLPSTLS LSSGSQILVC PPGVPQTYLP  300
SHVNAAAAEI DPRQMNHFQM LASSTQNLFP NSLTPSSYSM NQSARPFHFS LTPRLFHSLD  360
SGNQPDSNNN NNNKDQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-1858112155Putative transcription factor PCF6
5zkt_B5e-1858112155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29905.m000443
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527630.10.0transcription factor TCP13
TrEMBLB9SNR10.0B9SNR1_RICCO; Transcription factor, putative
STRINGXP_002527630.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-49plastid transcription factor 1