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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29904.m003012 | ||||||||
Common Name | RCOM_1023150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | GATA | ||||||||
Protein Properties | Length: 205aa MW: 23147.4 Da PI: 10.7035 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.7 | 8.9e-20 | 126 | 160 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l 29904.m003012 126 CQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRL 160 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.281 | 120 | 156 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.0E-15 | 120 | 170 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.14E-15 | 122 | 184 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.7E-15 | 124 | 158 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.07E-14 | 125 | 175 | No hit | No description |
Pfam | PF00320 | 2.6E-17 | 126 | 160 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 126 | 151 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MKTRSSYREF AEEELEWLSN KDAFPSVETF VDILTENPGS LQKHRSPVSV LENSTTSSTS 60 NSGHSGTNDS VIMNYCRSLH VPVKARSKPH RRRRRDLGGQ QCWWSQENLK KVKVVKSSSS 120 TIGRKCQHCG AEKTPQWRAG PLGPKTLCNA CGVRYKSGRL VPEYRPASSP TFSSVLHSNS 180 HRKVLEMRRQ KQMMGIMVVK PMEKG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29904.m003012 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012092669.1 | 1e-106 | GATA transcription factor 1 | ||||
Swissprot | Q8LAU9 | 7e-53 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | B9RWP4 | 1e-151 | B9RWP4_RICCO; GATA transcription factor, putative | ||||
STRING | XP_002518163.1 | 1e-151 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8537 | 29 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 2e-50 | GATA transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | 29904.m003012 |