PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29900.m001558
Common NameRCOM_1012290
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family LBD
Protein Properties Length: 252aa    MW: 28255.6 Da    PI: 9.236
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29900.m001558genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.64.7e-29151132100
         DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                    CaaCk++rrkC + C l pyf  ++++++++++k+FG sn+ k++++l+ ++r +a++slv+eA  + +d v+G +g++++lqq+ + lk+++++l
  29900.m001558  15 CAACKHQRRKCGDVCLLQPYFGVDRTEDLQAAQKVFGISNMNKMMRELEVKDRAKAIESLVWEAWLWNQDKVNGPLGHYRQLQQENALLKNQINHL 110
                    **********************************************************************************************99 PP

         DUF260  98 kee 100
                    +++
  29900.m001558 111 NQK 113
                    987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.57113114IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-2915111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSRENNGESS RRRGCAACKH QRRKCGDVCL LQPYFGVDRT EDLQAAQKVF GISNMNKMMR  60
ELEVKDRAKA IESLVWEAWL WNQDKVNGPL GHYRQLQQEN ALLKNQINHL NQKLQILSRS  120
MSLGNLQGMV PNDSESGRTY GWNSENLASD LAMYNNNNSN INADVVRLPL NSYPTAPSWP  180
IQQRQENLVL NNYGTNIGQP GCIVPSLVQS QQRGNLGNTR VANSFNAQGS HTGSAGTTTN  240
ANPEVERRIS WI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-151511412111LOB family transfactor Ramosa2.1
5ly0_B4e-151511412111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29900.m001558
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015576883.11e-169LOB domain-containing protein 2
TrEMBLB9S9470.0B9S947_RICCO; LOB domain-containing protein, putative
STRINGXP_002522516.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF147861315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.16e-26LOB domain-containing protein 2