PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

FAR1

Protein Properties

Length: 749aa MW: 85735.4 Da PI: 6.3298

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29889.m003255	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.5	7e-21	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w+vt +++ HnHel 29889.m003255 59 EFYCSFAKQCGFSIRRHRTRGKdGIGRGVTRRDFTCHRGGFPQMKPSEDGKMQRNRKSSRCGCQAYMRIVKRAdfdVPEWRVTGFSNIHNHELL 152 6*************999877456677****************9***************98887676789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.0E-18	59	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.1E-24	275	367	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.668	539	587	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-7	561	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.3E-7	562	589	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence Send to blast
MSEGTSMVME SSENGTDISQ DDTGNVEEIP EDTILSRQTS VNLVPFIGQR FVSQDAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGIGRGVTRR DFTCHRGGFP QMKPSEDGKM QRNRKSSRCG 120 CQAYMRIVKR ADFDVPEWRV TGFSNIHNHE LLKSNEVHLL PAYCTMSPDD KTRICMFAKA 180 GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNIN RDNDAIDLIA MCKKLKDEDH 240 NFKYDFKIDG NNRLEHIAWS YASSIQLYEA FGDAVVFDTT HRLDAYDMIL GIWLGLDNHG 300 MTCFFGCVLL RDENMQSFSW ALKAFMDFMN GKAPHTIMTD QNMWLKEAIA IEIPETKHAF 360 CIWHILAKFS DWFSLLLESC YDDWKAEFLR LYNLEFVEDF EEGWKEMVDK YGLHANKHIA 420 SLYALRTFWA LSYLRHYFFA GMMNTCQSES INAFIQRFLS AQSQLERFIE RVADIVDLNN 480 HSGSKAETHR KLQKVYLKTG SPIESHAASI LTPYAFNKLQ EELVLAPQYA SFQIDDYGYQ 540 VRHHTQISGG CKVIWDPCQE HISCSCSRFE FLGILCRHVL RVLSNNNCFH IPDQYMPARW 600 RDVDLSSTAR TQSDRIQLLE SMASTLVTEA VETEERLNVA CEEIAMVLSR IKDLPRQTHD 660 ENAYNCASDS LILPDVEDAD GVVQTLAIGN PHDSISLGKL KERRPRDGTD ISRKRRHCSG 720 PCCGQFGHDV SDCPIMGSDH LNGAALGYI

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence Send to blast

MSEGTSMVME SSENGTDISQ DDTGNVEEIP EDTILSRQTS VNLVPFIGQR FVSQDAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGIGRGVTRR DFTCHRGGFP QMKPSEDGKM QRNRKSSRCG  120
CQAYMRIVKR ADFDVPEWRV TGFSNIHNHE LLKSNEVHLL PAYCTMSPDD KTRICMFAKA  180
GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNIN RDNDAIDLIA MCKKLKDEDH  240
NFKYDFKIDG NNRLEHIAWS YASSIQLYEA FGDAVVFDTT HRLDAYDMIL GIWLGLDNHG  300
MTCFFGCVLL RDENMQSFSW ALKAFMDFMN GKAPHTIMTD QNMWLKEAIA IEIPETKHAF  360
CIWHILAKFS DWFSLLLESC YDDWKAEFLR LYNLEFVEDF EEGWKEMVDK YGLHANKHIA  420
SLYALRTFWA LSYLRHYFFA GMMNTCQSES INAFIQRFLS AQSQLERFIE RVADIVDLNN  480
HSGSKAETHR KLQKVYLKTG SPIESHAASI LTPYAFNKLQ EELVLAPQYA SFQIDDYGYQ  540
VRHHTQISGG CKVIWDPCQE HISCSCSRFE FLGILCRHVL RVLSNNNCFH IPDQYMPARW  600
RDVDLSSTAR TQSDRIQLLE SMASTLVTEA VETEERLNVA CEEIAMVLSR IKDLPRQTHD  660
ENAYNCASDS LILPDVEDAD GVVQTLAIGN PHDSISLGKL KERRPRDGTD ISRKRRHCSG  720
PCCGQFGHDV SDCPIMGSDH LNGAALGYI

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29889.m003255

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002519184.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_015574764.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_015574765.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	B9RZL5	0.0	B9RZL5_RICCO; Uncharacterized protein
STRING	XP_002519184.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	29889.m003255
Entrez Gene	8258774

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]