PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29889.m003248
Common NameLOC8275594, RCOM_0999460
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GATA
Protein Properties Length: 149aa    MW: 16282.3 Da    PI: 10.4429
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29889.m003248genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.93.2e-192962134
           GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                   C+ CgttkTplWR gp g+k+LCnaCG++ rkk+
  29889.m003248 29 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKK 62
                   ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.7432359IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.14E-132363No hitNo description
SMARTSM004013.6E-152379IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.7E-162763IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.06E-142881No hitNo description
PROSITE patternPS0034402954IPR000679Zinc finger, GATA-type
PfamPF003204.9E-172963IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MLDPSEKILE FEDMSSKSAE GENQQKKSCA DCGTTKTPLW RGGPAGPKSL CNACGIRSRK  60
KKRDSLGLNR ASSNPDKKSR KHSSSNGSSN NHNSNNSNRL GDGLKQRLLA LGREVLMQRS  120
SVEKQRRKLG EEEQAAVLLM ALSYGSVYA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29889.m003248
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818485e-34LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132605e-34LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002519177.11e-105GATA transcription factor 15
SwissprotQ8LG104e-51GAT15_ARATH; GATA transcription factor 15
TrEMBLB9RZK81e-103B9RZK8_RICCO; GATA transcription factor, putative
STRINGXP_002519177.11e-104(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.16e-51GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]