PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29887.m000238 | ||||||||
Common Name | RCOM_0997110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | B3 | ||||||||
Protein Properties | Length: 180aa MW: 20808.1 Da PI: 11.1525 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.5 | 3e-19 | 29 | 113 | 5 | 90 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsef 90 + + + + ++ + +p +fa+++ ++ + tl+ ++gr+W+v++++r++ g+ + l GWk+F+++n+L+ gD+++F+l++r+++ 29887.m000238 29 FANRYGNGKHSIHIPQSFATKYLRSH-G--NATLNVLDGRTWSVEYKIRRTHGTtrTRLFHGWKKFAQDNHLEIGDVCIFELINRTKT 113 56777888899***********4443.3..48888899********997777665688889*********************987444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-20 | 14 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.12E-18 | 16 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.55E-15 | 19 | 111 | No hit | No description |
PROSITE profile | PS50863 | 12.534 | 25 | 121 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-10 | 28 | 121 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-17 | 32 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.5E-4 | 117 | 167 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MASCSKQDNG RLMFKTNRPH FFKGITEKFA NRYGNGKHSI HIPQSFATKY LRSHGNATLN 60 VLDGRTWSVE YKIRRTHGTT RTRLFHGWKK FAQDNHLEIG DVCIFELINR TKTAFKHVPV 120 KSMVKCTKRS RENVMLIVGN RQWPVKMISY TSDGRSKFSA GWLGFARGIL YKLDIFAFSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29887.m000238 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025015420.1 | 9e-46 | B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | B9T232 | 1e-132 | B9T232_RICCO; Uncharacterized protein | ||||
STRING | XP_002532301.1 | 1e-133 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16088 | 5 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 5e-07 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 29887.m000238 |