PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29883.m002030
Common NameRCOM_0993100
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 189aa    MW: 21357.9 Da    PI: 7.9278
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29883.m002030genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-052446123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C++ F++   L  H+++H
  29883.m002030 24 YTCSFCKRQFNSAQALGGHMNVH 46
                   9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-42149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.9E-72151No hitNo description
PfamPF139129.1E-72447IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2612451IPR007087Zinc finger, C2H2
SMARTSM003550.00312446IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MERTYLGSEG DNTSSGFLWP QRNYTCSFCK RQFNSAQALG GHMNVHRRDR AMLIQLPPWV  60
FECPNPNNSK SHSNPSFSSS TSLSSSYHYS HHSFLSPSLT SSFSSSPSYN QKEKKSTPES  120
HHSSSPLISE DLTKKKKNMR AVVEAQELDF AQKYELEVLK KSEVISLDLE IGCKDPKEAL  180
DLELRLGCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-111946229superman protein
2l1o_A2e-111946229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29883.m002030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025013454.11e-138transcriptional regulator SUPERMAN
TrEMBLB9S4W01e-137B9S4W0_RICCO; Transcriptional regulator SUPERMAN, putative
STRINGXP_002521017.11e-138(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.14e-22zinc finger protein 11