PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29883.m001988
Common NameLOC8274724, RCOM_0991590
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 299aa    MW: 31593.8 Da    PI: 6.258
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29883.m001988genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.7e-10148192554
                    HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                    h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  29883.m001988 148 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 192
                    99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-15141202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-15145202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-7148192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MANNPTEPPA DDFLQEILGL PNFASADAAG LVGADGALAT PMMLQLSSGD GSNHITALGG  60
GGGGGGGAGF HGFPLGLSLE QGKGGFLKPE EASGSGKRFR DDVVDGRANT VKNVFHGQPM  120
PTTMAAAPHP PTMRPRVRAR RGQATDPHSI AERLRRERIA ERIRALQELV PSVNKTDRAA  180
MLDEIVDYVK FLRLQVKVLS MSRLGGAGAV APLVTDIPLS SVEDETGEGG RNQPAWEKWS  240
NDGTERQVAK LMEENVGAAM QFLQSKALCI MPISLATAIY HTQAPDTSTI VKPETNPPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152157RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29883.m001988
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894101e-163KP689410.1 Prunus pseudocerasus isolate Unigene16804 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520976.10.0transcription factor UNE12
SwissprotO227681e-137UNE12_ARATH; Transcription factor UNE12
TrEMBLB9S4R90.0B9S4R9_RICCO; DNA binding protein, putative
STRINGXP_002520976.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-116bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]